Malurus melanocephalus (red-backed fairy wren): 130580046
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Entry
130580046 CDS
T09178
Symbol
PATL1
Name
(RefSeq) protein PAT1 homolog 1
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
130580046 (PATL1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmea03019
]
130580046 (PATL1)
Messenger RNA biogenesis [BR:
mmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
130580046 (PATL1)
mRNA degradation factors
5'-3' decay
Decapping complex
130580046 (PATL1)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
130580046
NCBI-ProteinID:
XP_057233283
LinkDB
All DBs
Position
Unknown
AA seq
768 aa
AA seq
DB search
MRKPVPRGGHTSLEDCPLDEDEDAFQALGEEDEDIDQFNDDTFGAGAVDDDWQEAHERLA
ELEDKAGLSRERDGPIGNDGDVLGDPEDALAERLTRLVIDSELEDPAIMQAVHTRGPPQQ
PGGLNSSIWDSSAVLRRIRGPLLAQEMPSVSVLDYALPQKPXQARDEERDPSERVLPRRS
SSPIIGSPPVRAVPIGTPPKQPAIPNFNQQILCPKPVHIRATMQQRYPAPYGERMSPNQL
CNVPNSSLLGHPFPHSVSPVLTHLQRAQLLGGAQAGRMSPSQFARVSGLVGSPLPSVNPK
LLQGRVGQMMSPAGGFRAFFGAPPAPPPSQLPHPPGSHLQNLRPQPQMFRPDTTHLHPQH
RRLLHQRQQQNRNQHRSLNGSGGDRGGHRSSHQEQIRKDPYANLMLQREKDWVSKIQMMQ
LQSTDPYLDDYYYQNYFQKLEKLAAAEEVHGDGPKKERTKLITPQVAKLEHTYKPVQFEG
SLGKLTVSSVNNPRKMIDAVVTSRSEDDETKEKQVRDKRRQTLVTIEKTYSLLLDVEDYE
RRYLLSLEGERPALMGERKQKICDMYDNLRGKAPGQDRPSDDHFMQIMCIRKGKRLVARI
LPFLAPEQAADVLMATARNLPFLIKKDAQDEVLPCLLRPFSHVLYHLPLATVTSLVQQLT
NLPQSSAAPTNLHLTAVLQNKFGLSLLYLVLSRGEELQSSDTNTELMQDNQWTELMLMAT
RELLRIPQGALAKPVSIPSNLISLFSRYVDQQKLNLLETKLHLVHGIR
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atgaggaagccggtcccccgtgggggtcacacgtccctggaggactgcccgctggacgag
gatgaagacgccttccaggccctgggggaggaggatgaagacatcgaccagttcaatgat
gacaccttcggggccggggcygtcgatgacgactggcaggaggcccacgagcggctggca
gagctggaggacaaggccgggttgagccgggagcgggatggtcccatcgggaatgatggg
gacgttctgggcgatcccgaggatgcgctggctgagagactcacacggctcgtcatcgac
agcgagctggaggacccggccatcatgcaggccgtgcacaccaggggtcccccgcagcaa
cctggagggctgaattccagcatctgggacagctcggccgtgctgcggcgcatccggggg
ccgctcctagctcaggagatgccgtcggtgtccgtgctggattacgccctgccccagaag
cctscgcaggctcgggatgaggagcgagatccgtcggagcgggtgctgccccggcgctcc
tcgtcccccatcatcgggagccccccggtccgygccgttcccatcggcacccctcctaaa
cagcccgccatcccaaatttcaaccagcagatcctgtgtcccaagcctgtccacatccga
gctaccatgcagcagcgttatcccgctccctatggagagaggatgtcccccaaccagctc
tgcaatgttccgaattcctccctgctgggccacccgttcccccacagcgtctctcccgtt
ctcacacacctgcagagagcccagctgctcggaggagcccaggccggccgaatgtccccc
agccagtttgcccgggtgtctgggctggtggggagcccgctgccctccgtgaatcccaag
ctgctccagggcagagttgggcagatgatgtcccccgctggagggttccgtgccttttty
ggggctccccctgccccgcccccctcgcagctgccgcatcctccaggatcccacctgcag
aacctgaggccacagccccagatgttccggccggacacgacccatttgcacccccagcac
cgccggctcctgcaccagcggcagcagcagaaccggaaccagcaccggagcctcaacggc
tctgggggggaccgagggggccaccggagcagccatcaggagcagatccgtaaggatccc
tacgccaacctcatgctgcagcgggaaaaggactgggtgtccaagatccagatgatgcag
ctgcagagcactgatccctacctggatgattattattaccagaattacttccagaagctg
gagaagttggcagcagccgaggaagtgcacggtgacggtcccaagaaggagcgcactaaa
ctcatcacccctcaggtggccaagctggaacacacctacaagccagtgcagtttgagggc
tcgctgggaaaactcactgtctccagcgtcaacaacccgcggaagatgatcgatgccgtg
gtgacatcccgcagcgaggatgatgagacgaaggagaagcaggtccgggataagaggcgg
cagaccctcgtcacgattgagaagacatacagcctcctcttggacgtggaggactatgag
cgccgctacctcctgagcctagaaggggagcggccagccctgatgggagagaggaagcag
aagatctgtgacatgtaygacaatctgagggggaaggcgcctggacaggacaggccgagt
gatgaccacttcatgcagatcatgtgcatccggaaaggaaagcgcctggtggcccggatc
cttcccttccttgccccagagcaagcggccgacgtgctgatggccacagccaggaacytg
cccttcctcatcaagaaggatgctcaggatgaggtgcttccctgcctcttgaggcccttt
tcccacgtcctctaccaccttcccttggcaacagtcaccagccttgtgcagcagctcacg
aacctacctcagagctccgccgctcccaccaacctgcacctcactgctgtgctccaaaac
aagttcggtctgtccctgctgtacctggtcctgagccgaggggaggaattgcagagttca
gacacgaacacggagctgatgcaggacaaccaatggacggaactgatgctgatggcgacc
cgggagctcctgcggatccctcagggagccttggcaaagcccgtgtccatcccctccaac
ttgatctccctcttctctcgctacgtcgaccagcagaagctgaacctgctggagacgaaa
ttgcacttagtgcacgggatccggtag
DBGET
integrated database retrieval system
