Malurus melanocephalus (red-backed fairy wren): 130580111
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Entry
130580111 CDS
T09178
Symbol
DDB1
Name
(RefSeq) DNA damage-binding protein 1
KO
K10610
DNA damage-binding protein 1
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03420
Nucleotide excision repair
mmea04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
130580111 (DDB1)
09124 Replication and repair
03420 Nucleotide excision repair
130580111 (DDB1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mmea04121
]
130580111 (DDB1)
03400 DNA repair and recombination proteins [BR:
mmea03400
]
130580111 (DDB1)
Ubiquitin system [BR:
mmea04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Adoptor protein
130580111 (DDB1)
DNA repair and recombination proteins [BR:
mmea03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
Cul4-DDB2 complex
130580111 (DDB1)
TCR (transcription coupled repair) factors
Cul4-CSA complex
130580111 (DDB1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_RSE1_2nd
CPSF_A
Beta-prop_RSE1_1st
Beta-prop_RIG_2nd
Motif
Other DBs
NCBI-GeneID:
130580111
NCBI-ProteinID:
XP_057233375
LinkDB
All DBs
Position
Unknown
AA seq
1140 aa
AA seq
DB search
MSYNYVVTAQKPTAVNGCVTGHFTSAEDLNLLIAKNTRLEIYVVTAEGLRPVKEVGMYGK
TTVMELFRPKGESKDLLFILTAKYNACILEYKQNGDSIDIITRAHGNVQDRIGRPSETGI
IGIIDPECRMIGLRLYDGLFKVIPLDRENKELKAFNIRLEELQVIDVKFLYGCQAPTICF
VYQDPQGRHVKTYEVSLREKEFNKGPWKQENVEAEASMVIAVPEPFGGAIIIGQESITYH
NGDKYLAIAPPIIKQSTIVCHNRVDPNGSRYLLGDMEGRLFMLLLEKEEQMDGTVTLKDL
RVELLGETSIAECLTYLDNGVVFVGSRLGDSQLVKLNVDSNEQGSYVVAMETFTNLGPIV
DMCVVDLERQGQGQLVTCSGAFKEGSLRIIRNGIGIHEHASIDLPGIKGLWPLRSDPHRE
TDNTLVLSFVGQTRVLMLNGEEVEETELTGFVDDQQTFFCGNVAHQQLIQITSASVRLVS
QEPKALVSEWKEPNGKNISVASCNSNQVVVAVGRALYYLEIRPQELRQISCTEMEHEVAC
LDITPLGDSNGMSPLCAIGLWTDISARILKLPSFELLHKEMLGGEIIPRSILMTTFESSH
YLLCALGDGALFYFGLSLETGLLSDRKKVTLGTQPTVLRTFRSLSTTNVFACSDRPTVIY
SSNHKLVFSNVNLKEVNYMCPLNSDGYPDSLALANNSTLTIGTIDEIQKLHIRTVPLYES
PRKICYQEVSQCFGVLSSRIEVQDASGGTTALRPSASTQALSSSVSTSKLFSSSTAPHET
SFGEEVEVHNLLIIDQHTFEVLHAHQFLQNEYALSLVSCKLGKDPNTYFIVGTAMVYPEE
AEPKQGRIVVFHYSDGKLQSLAEKEVKGAVYSMVEFNGKLLASINSTVRLYEWTAEKELR
TECNHYNNIMALYLKTKGDFILVGDLMRSVLLLAYKPMEGNFEEIARDFNPNWMSAVEIL
DDDNFLGAENAFNLFVCQKDSAATTDEERQHLQEVGLSHLGEFVNVFCHGSLVMQNLGET
STPTQGSVLFGTVNGMIGLVTSLSESWYNLLLDMQNRLNKVIKSVGKIEHSFWRSFHTER
KTEPATGFIDGDLIESFLDISRPKMQEVVANLQIDDGSGMKREATVDDLIKIVEELTRIH
NT seq
3423 nt
NT seq
+upstream
nt +downstream
nt
atgtcctacaactacgtggtgacggcgcagaagccgacggccgtcaatggctgcgtcact
ggacacttcacctctgcggaggacctgaacctgctgattgccaagaacacccgactggag
atctatgttgtcacagccgaggggcttcggcccgtcaaggaagtgggaatgtacggaaaa
accaccgtcatggagctcttccgccccaagggggagagcaaggatttgctgttcatcctg
acagccaagtacaatgcctgcatcctggaatacaagcagaacggggatagcattgacatc
atcacccgwgcccatggaaacgtgcaggatcgcatcgggcgcccctcggagaccgggatc
attgggatcattgatccygagtgccggatgatcgggctgcggctctacgatggcctcttc
aaggtcatccccctggatcgggagaacaaggaattgaaagccttcaacatccgcctggaa
gagctccaggtcatcgatgtgaaattcctttacggctgccaagctcccaccatctgcttt
gtctaccaggacccccagggccgccacgtgaaaacatatgaggtgtccctacgggagaag
gaattcaacaaaggcccttggaagcaggaaaacgtggaggctgaagcctccatggtcatt
gcagtgccagagcccttcggtggtgccatcatcattgggcaggaatccatcacttaccac
aatggggataaatacctggctatcgctcctcctatcatcaagcaaagcaccatcgtgtgt
cacaaccgtgtggatcccaacggatcccggtatttgctgggagacatggaagggcggctc
ttcatgytgctcctggagaaggaggagcagatggatggcactgtcaccttgaaggacctg
cgtgtggagctcctgggagagacatccattgccgagtgcctgacmtacctggataacgga
gtggtgtttgttgggtccaggcttggagattcccagcttgtaaagctcaacgtggacagc
aatgagcagggatcctatgtggtggccatggagaccttcaccaacctcggccccatcgtg
gacatgtgtgtggtggacctggagaggcaaggccaaggccagctggtcacctgttctggg
gccttcaaagaaggatcactgcggatcatccgaaacggcattgggatccaygagcatgcc
agcatcgacctgccaggaattaaaggtttgtggcccctcagatcggatccacaccgggag
accgacaacaccttagtgctgtcctttgttggccagaccagggttctgatgttaaatgga
gaggaagtagaagaaactgagctcacgggatttgtggatgaccagcagacgttcttctgt
ggcaacgtggcacaccaacagctgatccagatcacctctgcttcggtgcgactggtcagc
caggagcccaaagccctggtgagtgagtggaaagagcccaaygggaagaacatcagcgtt
gcttcctgcaacagcaaccaggtggtggtggcygtgggaagagccttgtactacctggag
atccggccccaggagctccggcagatcagctgcacagagatggagcatgaggtggcctgc
ctggacatcacccctctgggagactccaacgggatgtccccgctctgcgccatcgggctc
tggacagacatctctgcccgcatcctgaagctgccgtccttcgagctgctgcacaaggag
atgctgggaggagagattatccctcgttccatcctgatgacgaccttcgagagcagccac
tacctcctgtgtgccctgggggatggagctctcttctacttcggcctcagcctcgagaca
ggcttgctgagtgacaggaagaaggtgacactgggcacacagcccacagtgctgaggaca
ttccgctccttgtccaccaccaatgtgtttgcctgctccgaccgccccaccgtcatctac
agcagcaaccacaagctggtgttctccaacgtcaatctcaaggaggtcaactacatgtgc
cccctcaattctgatggatatcccgacagcttggccttggccaacaatagcaccctgacc
attggcaccattgatgagatccagaagctgcacatccgcactgttcccctctacgagtca
cccaggaaaatctgctaccaagaggtatcccaatgttttggggtgctctccagycggatt
gaggtgcaggatgccagcgggggcaccacagcactcagacccagtgccagcacccaggcc
ttgtccagcagtgtgagcaccagcaagctgttttccagcagcacrgctccacatgagaca
tcctttggagaggaggtggaagtgcacaacctgcttatcatagaccagcacaccttygaa
gtgcttcatgctcaccaattcctgcaaaatgagtatgccctgagcctggtctcctgcaag
ctgggaaaggatcccaacacctacttcatcgtgggcactgccatggtgtatcctgaggaa
gcggagcccaagcagggccggattgttgtcttccactactccgatgggaagctgcagagc
ctggctgagaaggaggtcaagggtgctgtgtattccatggtggaattcaacgggaagctc
ttagccagtatcaacagcacggtccgcctgtacgagtggacagcggagaaggaactgcgc
acggaatgcaaccactacaacaacatcatggccctgtacctgaaaaccaagggggatttc
attctggtgggagacctcatgcgctccgtgctgctcctggcctacaaacccatggaaggg
aattttgaggagattgcccgggayttcaatccaaactggatgagcgctgtggagatcctg
gatgatgataatttcttgggagcagagaatgctttcaatctgtttgtgtgccagaaggac
agcgcggccacgacggatgaggagcggcagcacctgcaggaagtgggattatcccacctg
ggagagtttgtcaatgtcttctgccacggatccctggtcatgcagaacctgggagagact
tccacacccacccaaggatctgtgctcttcggcactgtcaatggaatgatyggcctggtg
acatccctgtcagaaagctggtacaacctgctcctggacatgcagaacaggctcaacaaa
gtyatcaagagtgtggggaagattgagcattccttctggagatcattccacaccgaacgg
aagactgaaccggccacggggttcatcgacggggacctgattgagagtttcctggacatc
agcaggcccaagatgcaggaagtggtagcaaacctgcagatcgacgatggaagcggcatg
aagagggaagccaccgtggatgatctgataaagattgtggaggagctgacycggatccat
tag
DBGET
integrated database retrieval system
