Malurus melanocephalus (red-backed fairy wren): 130580482
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Entry
130580482 CDS
T09178
Symbol
SF3B1
Name
(RefSeq) splicing factor 3B subunit 1 isoform X1
KO
K12828
splicing factor 3B subunit 1
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
130580482 (SF3B1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmea03041
]
130580482 (SF3B1)
03036 Chromosome and associated proteins [BR:
mmea03036
]
130580482 (SF3B1)
Spliceosome [BR:
mmea03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
130580482 (SF3B1)
Complex B
130580482 (SF3B1)
Complex C
U2 SnRNP specific factors
130580482 (SF3B1)
Chromosome and associated proteins [BR:
mmea03036
]
Eukaryotic type
Chromatin remodeling factors
B-WICH complex
130580482 (SF3B1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
SF3b1
PPP2R1A-like_HEAT
TOR1L1_N
HEAT_EZ
HEAT_EF3_N
HEAT_ECM29
Htt_N-HEAT_1
HEAT_2
XMAP215_CLASP_TOG
Adaptin_N
UNC45-central
DUF2298
TALPID3
Motif
Other DBs
NCBI-GeneID:
130580482
NCBI-ProteinID:
XP_057233988
LinkDB
All DBs
Position
Unknown
AA seq
1275 aa
AA seq
DB search
MAKIAKTHEDIEAQIREIQGKKPALDEAQGVGLDSTGYYDQEIYGGSDSRFAGYVTSIAA
TELEDDDDDYPSTSLLGQKKPGYHAPVALLNDIPQSTEQYDPFAEHRPQKIADREDEYKK
HRRMMIISPERLDPFADGGKTPDPKMNARTYMDVMREQHLTKEEREIRQQLAEKAKAGEL
KVVNGAASQPPSKRKRRWDQTADQTPGATPKKLSSWDQAETPGHTPSLRWDETPGRAKGS
ETPGATPGSKIWDPTPSHTPAGAATPGRDTPGHATPGHGGATSSARKNRWDETPKTERDT
PGHGSGWAETPRTDRGGDSIGETPTPGASKRKSRWDETPASQMGGSTPVLTPGKTPIGTP
AMNMATPTPGHIMSMTPEQLQAWRWEREIDERNRPLSDEELDAMFPEGYKVLPPPAGYVP
IRTPARKLTATPTPLGGMTGFHMQTEDRTMKSVNDQPSGNLPFLKPDDIQYFDKLLVDVD
ESTLSPEEQKERKIMKLLLKIKNGTPPMRKAALRQITDKAREFGAGPLFNQILPLLMSPT
LEDQERHLLVKVIDRILYKLDDLVRPYVHKILVVIEPLLIDEDYYARVEGREIISNLAKA
AGLATMISTMRPDIDNMDEYVRNTTARAFAVVASALGIPSLLPFLKAVCKSKKSWQARHT
GIKIVQQIAILMGCAILPHLRSLVEIIEHGLVDEQQKVRTISALAIAALAEAATPYGIES
FDSVLKPLWKGIRQHRGKGLAAFLKAIGYLIPLMDAEYANYYTREVMLILIREFQSPDEE
MKKIVLKVVKQCCGTDGVEANYIKTEILPPFFKHFWQHRMALDRRNYRQLVDTTVELANK
VGAAEIISRIVDDLKDEAEQYRKMVMETIEKIMGNLGAADIDHKLEEQLIDGILYAFQEQ
TTEDSVMLNGFGTVVNALGKRVKPYLPQICGTVLWRLNNKSAKVRQQAADLISRTAVVMK
TCQEEKLMGHLGVVLYEYLGEEYPEVLGSILGALKAIVNVIGMHKMTPPIKDLLPRLTPI
LKNRHEKVQENCIDLVGRIADRGAEYVSAREWMRICFELLELLKAHKKAIRRATVNTFGY
IAKAIGPHDVLATLLNNLKVQERQNRVCTTVAIAIVAETCSPFTVLPALMNEYRVPELNV
QNGVLKSLSFLFEYIGEMGKDYIYAVTPLLEDALMDRDLVHRQTASAVVQHMSLGVYGFG
CEDSLNHLLNYVWPNVFETSPHVIQAVMGALEGLRVAIGPCRMLQYCLQVWLCVCWGSRD
STCQERLLSRRQKVS
NT seq
3828 nt
NT seq
+upstream
nt +downstream
nt
atggcgaagatcgccaagactcacgaagatattgaagcacaaattcgagaaattcaagga
aaaaagcctgctctagatgaagcacaaggagtaggccttgattccacaggatattacgat
caagaaatttatggtggcagtgacagcagatttgctgggtatgtcacttctattgcagca
actgaattggaagatgatgatgatgactacccttccacaagtttgcttggccagaagaag
ccaggrtaccatgctccagtggcattgcttaatgacataccacaatctactgaacagtat
gatccttttgcagagcaccgtcctcaaaagattgcagatcgggaagatgagtacaaaaag
cacaggcggatgatgataatttcccctgagcgtcttgatccttttgcagatggagggaag
actccagaccctaaaatgaatgccagaacatacatggatgttatgcgtgaacagcattta
acaaaagaagagagggaaattaggcaacaactagctgaaaaagctaaagctggagagctt
aaagtcgtcaatggagccgcttcccagccaccttcaaaacgcaaacggcgttgggatcag
acagctgatcagactcctggtgctacacctaaaaaattgtccagctgggatcaagcagag
actcctggacacaccccatctctgcgatgggatgaaactccaggccgtgcaaagggtagt
gaaactccyggtgccaccccaggctcaaaaatatgggatccaactcccagccacacacca
gcaggagctgcgacacccggccgggacacgcccggtcacgcaacaccaggccatggaggc
gccacttccagtgcacgaaaaaatcgatgggacgaaacaccgaagacagaaagagatact
ccgggccatggcagtggatgggctgagacacctcgtacagatagaggtggtgactccata
ggtgagacaccaaccccaggagcaagcaaaaggaaatcacggtgggatgaaacacctgcg
agccagatgggtggcagcactcctgttctgacacctggcaaaacacccattggtacacca
gctatgaacatggcaacccctacaccaggtcacatcatgagcatgactcctgaacagctg
caggcttggcgttgggagagggaaattgatgagagaaacagrccactttctgatgaagaa
ttggatgccatgtttccagagggatataaggttctgccgcccccagctggttatgtaccc
atccgkacacccgctcggaagctcacagcgactccaacgcccttggggggcatgacaggc
ttccacatgcagacagaggaccgcactatgaagagtgttaatgaccagccatctggyaac
ctgcccttcctgaaaccagatgatatccagtactttgacaagctgctggttgatgttgat
gaatcaactctgagtcctgaggaacagaaggagagaaaaataatgaaattacttctgaaa
ataaagaatggcacacctcccatgcgaaaggctgcgttgcgacaaattactgataaagct
cgggaatttggagcggggccgttgttcaatcagattctgcctctgctgatgtcaccaaca
cttgaagatcaggagcgtcacttgcttgtcaaagtcatcgacagaatcctttacaaattg
gatgacttggtccgaccatacgtacacaagatccttgtcgtcattgaacccctgctgatt
gatgaagattactatgctagagtggaaggcagagaaattatttccaacttggctaaggct
gctggtttggcaacaatgatctccacaatgcgacctgatattgataacatggatgaatat
gtcagaaatacaacagctcgagcctttgctgttgttgcatctgctctgggcattccttct
ctgttacccttcttaaaagctgtctgtaaaagcaaaaaatcctggcaggccaggcacact
ggcatcaagattgtacagcagattgctattcttatgggttgtgctatcctgcctcatctc
aggagcttggttgaaattattgaacatgggctggtggatgagcagcagaaagttcgcacc
atcagtgctttggccattgcagctttggctgaggcagctactccctatggtattgagtca
tttgattctgtcctgaagcctttgtggaagggtatacgtcagcacagaggaaagggtttg
gctgcctttttgaaggctattggttacctgattccactcatggatgctgaatatgcaaac
tactacaccagagaagtcatgctaattcttatcagagagttccagtctcctgatgaagag
atgaaaaaaattgtgttgaaggtggtaaagcagtgttgtggtacggatggtgttgaagct
aactacattaaaacagaaatcttgccacctttcttcaagcacttctggcagcacagaatg
gcactggacagaagaaattacagacagttggttgatacaactgtggagctggcaaataaa
gttggagcagcagaaattatttccagaattgtggatgatctgaaagatgaggctgaacag
tacagaaaaatggtcatggaaacaattgagaagataatgggaaatctgggggcagcagac
attgatcataaactggaagagcagcttattgatggtattttgtacgcctttcaggaacag
acaacagaggattctgtgatgttgaatggttttggcacagtggttaatgctctaggcaaa
agagttaaaccctacttgccacagatctgtggtacwgttttgtggcgtttgaacaacaaa
tcagccaaagtcaggcagcaggcagctgacctgatctctcgtactgcagttgtcatgaag
acttgtcaagaggaaaaactgatgggacacttgggtgtggttttgtatgagtacctgggt
gaagaatatcctgaagtactgggcagcatactcggagcgcttaaggctattgtgaatgtt
ataggtatgcacaagatgacaccgccaatcaaagacctgctgccacggctgacccctatt
ttgaagaacagacatgagaaagtacaggaaaattgtattgatcttgttgggcgtattgca
gacagaggtgcagaatatgtttctgcaagagaatggatgaggatctgctttgaactgctt
gaattattaaaagctcacaagaaagctatcagaagagccacagtgaacacttttggttat
attgcaaaagctattggacctcaygatgtgttggccacgctgctaaacaatttgaaagta
caggaaaggcagaacagagtatgtactacagtagccattgctattgtggctgaaacatgc
tcacctttcacagtgctgcctgcactcatgaatgaatacagagttccagaactgaacgtc
cagaatggtgtgttaaaatctctttctttcctgtttgaatacattggagagatgggaaaa
gattacatttatgctgttacaccattgcttgaagatgctttaatggacagggatcttgta
cacagacaaacagccagtgctgtggttcagcatatgtcccttggtgtttatgggttcggc
tgtgaagattcccttaatcacttgttaaattaygtgtggcccaatgtgtttgaaacctct
cctcacgtcatccaggcagttatgggggctctggagggcctcagagttgctattgggccc
tgcaggatgttgcagtaytgtttacaggtatggctttgtgtttgctggggcagcagagac
agcacttgccaggaaagacttctttccaggagacaaaaagtcagctga
DBGET
integrated database retrieval system
