Malurus melanocephalus (red-backed fairy wren): 130581558
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Entry
130581558 CDS
T09178
Symbol
RC3H1
Name
(RefSeq) roquin-1
KO
K15690
RING finger and CCCH-type zinc finger domain-containing protein
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03000 Transcription factors [BR:
mmea03000
]
130581558 (RC3H1)
04121 Ubiquitin system [BR:
mmea04121
]
130581558 (RC3H1)
Transcription factors [BR:
mmea03000
]
Eukaryotic type
Zinc finger
Cys3His zinc factors
130581558 (RC3H1)
Ubiquitin system [BR:
mmea04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
130581558 (RC3H1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Serpin
Roquin_1_2-like_ROQ
ROQ_II
zf-RING_5
zf-RING_UBOX
Prok-RING_4
zf-RING_2
zf-C3HC4_4
zf-C3HC4_3
zf-CCCH
zf-C3HC4
zf-C3HC4_2
zf_CCCH_4
FYVE
zf-CCCH_4
Baculo_IE-1
PaaA_PaaC
Vesi_VP2
zf-RING_4
zf-RING_6
zf-RING_10
Motif
Other DBs
NCBI-GeneID:
130581558
NCBI-ProteinID:
XP_057235726
LinkDB
All DBs
Position
Unknown
AA seq
1533 aa
AA seq
DB search
MPVQAPQWTDFLSCPICTQTFDETIRKPISLGCGHTVCKMCLNKLHRKACPFDQTTINTD
IELLPVNSALLQLVGAQVPEQQPITLCSGAEDTKHYEEGKKCVEELALYLKPLSSARGVG
LNSTTQSVLSRPMQRKLVTLVHCQLVEEEGRIRAMRAARSLGERTVTELILQHQNPQQLS
SNLWAAVRARGCQFLGPAMQEEALKLVLLALEDGSALSRKVLVLFVVQRLEPRFPQASKT
SIGHVVQLLYRASCFKVTKRDEDSSLMQLKEEFRTYEALRREHDSQIVQIAMEAGLRIAP
DQWSSLLYGDQSHKSHMQSIIDKLQTPASFAQSVQELTIALQRTGDPANLNRLRPHLELL
ANIDPSPDAPPPTWEQLENGLVAVRTVVHGLVDYIQNHSKKGTDQQQPPQHSKYKTYMCR
DMKQRGGCPRGASCTFAHSQEELEKFRKMNKRLVPRRPLSASLGQLNEVGLPSGAILSEE
GGVDLPNRKTSALPNGIVSTGSTVTQLISRGTDSGYETTLKPGKMDHLSSSAPGSPPDLL
ESVPKSSISALPVNPHPVPARVPADLPTVSVTKQLQMVPRGSQLYNAQQADMFYQDPRGA
APSFEPAPYQQGVYYPTQSMSRFVRPPPSAPEAGAPYLEHYGPYLPERVVSPQYPQPQGY
PALAQPVYPPHYDSRRVYPPVQPYQREDVVRGSPVPIDIPQAAVPLYVPESRDRYQQTEA
YCTVAPHLSQIRPSCHRPHPSLDELHRRRKEIMAQLEERKVISPPPFAPSPTLPHPFHSE
EIFVFVQYLDEDLKVAGKYKGNDYSQYSPWSCDTIGSYIGTKDAKPKDVVAARSVEMANV
DSKAMCEQRLDMQRRAAETGDDDLIPFGDRPTVSRFGAISRTSKAMYQNSGPMQAMAVQG
AATKSIITDYSPYGTHGGWGGSPYSHQNIPSQGRFNDRERLSMSDVAGHGKQLPSAEREQ
QLRMELQQVDHQISQQTQMRGLEAVSNRLLLQREATTLAGQPQPQPPPPKWPGMISSEQL
SLELHQVEREIGKRTRELSMESQSSLDMKNKLGTTKQTENGQLEPQNKVPAEDLALTFGT
MHLLVVCLLGVWGLAAPEHYAVEDICTAKPRDIPVNPICIYRNSEKKPQEGEGQESAKDK
LPESTNPRVWELSKANSRFAVIFYKYLADSKDSGENIFMSPLSISTAFAMTKLGACGSTL
QQLMEVFRFDTISEKTSDQIHFFFAKLNCRLYKKANKSSELVSANRLFGEKSLVFNETYQ
NISEIVYGAKLWPLNFKEKPELSRQIINEWVANKTEKRITEVIPESGIDDLTVLVLVNTI
YFKGHWKSQFPAPNTKLDAFHKANGETCNVPTMYQESKFHYSFIPQDKVQVLELPYKGDD
ITMVLVLPSAGTPLEEVERDLTSEKLQGWIDSMKEVSLFVYLPRFRVEDSFSVKEKLRKM
GLEDLFSPENARLPGIVTEGRTDLYVSEAFHKAFLEVNEEGSEASAATAVTISGRSFPMN
RKIFNANRPFLLFIREAALNTIIFMGRIADPCS
NT seq
4602 nt
NT seq
+upstream
nt +downstream
nt
atgcctgtacaagctccacaatggacggattttctctcctgcccgatttgcacacagact
ttcgacgaaacgattcggaagcccatcagcttgggttgtggccacactgtctgcaagatg
tgtctcaacaagctccaccgtaaggcttgtccctttgaccagaccactatcaacacrgac
attgaactccttcctgtgaactcagccttgttgcaactcgtgggtgctcaggttcctgag
cagcagccgattactttatgcagtggagctgaagataccaagcattatgaggagggcaag
aagtgcgtggaagagttggcattgtaccttaaaccactcagcagtgcgagaggtgtgggt
cttaacagtactactcagagtgtgctgagtcgtcccatgcagaggaaacttgtgacatta
gtccattgccagctggtggaggaggaaggacggatcagagccatgcgtgcagcacggtcc
ctgggtgaaagaacagtcacagaactcattctccagcatcaaaaccctcagcagctctct
tccaacctctgggctgcagtgagagccagagggtgccagttccttgggccagcwatgcaa
gaggaagctttaaagttggttctgctggctttggaagatggatctgctctgtcacgaaag
gtcttggttctctttgtggtgcagaggctggagccacgattccctcaggcttctaaaact
agcattgggcatgttgtccagctcctttacagagcttcgtgcttcaaggtgaccaagcga
gatgaggattcctctctcatgcaactgaaggargaatttcggacttacgaagctctgaga
agggaacatgattcccagatagtccaaatagctatggaagcaggtttgcgtattgcacca
gaccagtggtcctcactgttatacggagaycagtctcacaaatcccacatgcagagtatc
atcgacaagttgcagaccccagcctcgtttgcgcaaagtgttcaggaactaactattgct
cttcagaggactggagatccagctaacctgaatcgtcttcgacctcacctagagctcctg
gcaaatattgatcccagtccagatgctccacctccaacatgggaacaactggaaaatgga
ctagttgctgtgaggactgtggttcatggcttagttgattatatccagaatcacagcaaa
aaaggaacagatcagcaacagccccctcagcacagcaagtacaagacgtacatgtgtcga
gacatgaagcagagaggaggatgtccccggggagccagctgcacctttgcacactcacag
gaggagctggaaaaattccgtaaaatgaacaagcgtcttgttcccagaagaccccttagt
gcctccctgggccagctgaatgaggtgggcctgccttcaggagctatcctctcagaggaa
gggggagtggacttgcccaataggaaaacttctgctctgccaaatggaattgtgtcaaca
ggcagcacggtgacgcaactaatttctcgagggactgactccggttatgaaactaccctg
aagccagggaagatggaccatctgagtagcagtgcccctggatcccctcctgacttgctg
gaatctgtccccaagagctctatttctgccttgccagtgaacccccatcctgtgcctgct
agggtgccagcagatctgcccacagtgtctgtcaccaagcagttgcagatggtaccacga
gggtctcagttgtacaatgcacaacaagcagatatgttttatcaagaccccagaggagct
gccccatcatttgagccagcaccctaccaacaaggagtgtactatcccactcagtccatg
tctcgctttgtccgacctcctccgtcggcgcccgaggcgggtgcaccgtacctggagcac
tatgggccatacctgccggagcgcgtggtgagcccacagtacccgcagccacaggggtac
ccggccctggcgcagcctgtgtatcccccgcactatgacagccgccgcgtgtaccctccc
gtgcagccctaccagcgggaggacgtggtgcggggcagcccggtgcccatcgacatcccr
caggcagctgtgcctctctacgtccctgagtccagagacagataccagcaaacagaggct
tattgcaccgtggctccgcatctcagtcagatcagaccttcgtgccacaggcctcatccc
agcctggatgaacttcaccgacgaaggaaagagatcatggcccaactagaggagaggaag
gtgatttctccacctccttttgcaccatcaccaaccttgcctcatccttttcactcagag
gagatttttgtttttgtacagtacttggatgaagatctgaaagtagctgggaaatacaaa
ggaaatgactacagccagtactctccctggtcctgtgacaccatcggctcctacattgga
accaaagatgcaaaacccaaagatgttgtggcagcaagaagtgtggagatggcgaatgtg
gacagtaaggccatgtgtgagcagcgactggacatgcagcgacgagcagctgagacggga
gacgatgacctcattccatttggagaccgaccaactgtgtcaagatttggggccatctct
cgtacttccaaagccatgtaccagaactccgggcctatgcaggccatggcggttcaggga
gctgccaccaaatccatcattacagactacagtccttatggaacccatggtggctgggga
ggctctccatattctcatcaaaatataccttctcagggacgtttcaatgacagggagaga
ctgtccatgtcggatgtggctggtcatgggaagcagttgccctcagctgaacgagagcag
cagctgcgcatggagctgcagcaagttgaccatcagatcagccagcagacacaaatgcgg
ggactggaggctgttagtaacaggctgctgttgcagagggaggcgactaccctggcaggc
caaccacagccccaacccccrcctcccaagtggcctgggatgatctcaagtgagcagctg
agcttggagctacaccaggtggaaagggaaattgggaagagaacccgtgagctgagcatg
gagagtcagtcttcactggatatgaaaaacaaactgggcaccactaaacagacagagaat
ggacaattagaaccacaaaacaaggttccagcagaggacctcgcactgacattcgggaca
atgcatctgcttgtggtgtgtctgctcggtgtctgggggctggctgctcctgagcactat
gccgtggaagacatctgcaccgcaaagccacgcgacatcccagtcaatcccatctgcatc
tatcgcaactccgaaaagaagccccaggagggtgaggggcaagagtcagccaaggacaag
ctcccggaatccaccaacccacgtgtctgggagctgtcgaaagccaattctaggtttgct
gtcatcttctacaagtacctggctgactccaaggacagtggggaaaacatcttcatgtca
cccctcagcatttccacggccttcgccatgaccaagctcggagcctgtggcagcaccctg
cagcagctcatggaggtatttagatttgacaccatttcrgagaagacatcagatcagatc
cacttcttctttgccaagctgaactgccgcctttacaagaaagcaaacaaatcctcagag
cttgtatcagccaatcgcctcttcggggagaaatctttggtctttaatgagacttaccag
aacatcagtgaaattgtttatggagcaaaactctggcccttgaacttcaaagagaagcca
gaactttccaggcagatcattaatgagtgggtggctaataagacagagaagcgcattaca
gaagtgatcccagaaagcggtattgatgatctcactgtcttggtcctggtcaacaccatt
tattttaaggggcaytggaaatcacagttcccagctccaaacacaaaactggatgcattt
cataaagccaatggtgagacctgcaatgtcccaactatgtaccaggagtccaaattccat
tactccttcatcccccaggacaaagtgcaggtgctggagctgccttacaaaggggatgat
atcacgatggtgctggtcctgcccagtgctgggacgccattggaggaggtggagcgagac
ctgacatcggagaagctgcagggctggatagactccatgaaggaggtctctctctttgtc
tacctccctcgcttccgtgttgaggacagcttcagtgtcaaggagaagctgaggaaaatg
gggttggaagatctcttcagtccagaaaatgccagactcccaggtatcgtcacagagggc
cgcacagacctgtatgtgtctgaggctttccacaaagccttccttgaggtgaatgaagaa
ggcagtgaggcatcagctgctacagctgtcactatctctggccgttccttccctatgaac
agaaaaatcttcaacgccaacaggcccttcctacttttcatccgggaagctgccctcaay
accatcatcttcatgggcaggatagccgatccttgttcctaa
DBGET
integrated database retrieval system
