Malurus melanocephalus (red-backed fairy wren): 130582403
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Entry
130582403 CDS
T09178
Symbol
RTCB
Name
(RefSeq) RNA-splicing ligase RtcB homolog
KO
K14415
tRNA-splicing ligase RtcB (3'-phosphate/5'-hydroxy nucleic acid ligase) [EC:
6.5.1.8
]
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmea03016
]
130582403 (RTCB)
Enzymes [BR:
mmea01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.8 3'-phosphate/5'-hydroxy nucleic acid ligase
130582403 (RTCB)
Transfer RNA biogenesis [BR:
mmea03016
]
Eukaryotic type
tRNA spricing factors
tRNA splicing ligase complex
130582403 (RTCB)
Prokaryotic type
tRNA splicing ligases
130582403 (RTCB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RtcB
Cu-oxidase_4
Motif
Other DBs
NCBI-GeneID:
130582403
NCBI-ProteinID:
XP_057237064
LinkDB
All DBs
Position
Unknown
AA seq
505 aa
AA seq
DB search
MSRSYNDELQYLDKIDKNCWRIKKGFVPNMRVEGVFYVNDPLEKLMFEELRNACRGGGAG
GFLPAMKQIGNVAALPGIVHRSIGLPDVHSGYGFAIGNMAAFDMSDPEAVVSPGGVGFDI
NCGVRLLRTNLDESDVQPVKEQLAQAMFDHIPVGVGSKGVIPMNAKDLEEALEMGVDWSL
REGYAWAEDKEHCEEYGRMLQADPNKVSSRAKKRGLPQLGTLGAGNHYAEIQVVDEIYNE
YAAKKMGIDHKGQVCVMIHSGSRGLGHQVATDALVAMEKAMKRDKIIVNDRQLACARIAS
AEGQDYLKGMAAAGNYAWVNRSSMTFLTRQAFAKVFNTTPDDLDMHVIYDVSHNIAKVEQ
HVVDGKERTLLVHRKGSTRAFPPHHPLIAVDYQLTGQPVLIGGTMGTCSYVLTGTEQGMT
ETFGTTCHGAGRALSRAKSRRNLDFQDVLDKLADMGIAIRVASPKLVMEEAPESYKNVTD
VVNTCHEAGISKKAIKLRPIAVIKG
NT seq
1518 nt
NT seq
+upstream
nt +downstream
nt
atgagccgcagttacaatgatgagctgcagtacctggataagatcgacaagaactgctgg
cggatcaagaagggcttcgtgccgaacatgcgtgtggaaggcgttttctacgtgaacgat
ccgctggagaagctgatgttcgaggagctgcgcaatgcctgccgcggcggaggtgcgggt
ggtttcttgcctgctatgaaacagattgggaatgtggctgcattacctggcattgttcat
agatcaataggtcttccagatgtccattctggctatggatttgctattggcaacatggct
gcctttgatatgagtgatcctgaagcagtggtttcaccaggtggtgtcggatttgacatc
aactgtggtgtccgcttgctgcggacaaatttggatgaaagtgatgtacagcctgtgaaa
gaacagctggcccaggccatgtttgaccacattcctgttggtgttggctccaaaggtgtc
atccccatgaatgccaaggatttggaagaggcaytggagatgggtgtggactggtctctc
cgggagggctatgcctgggcagaggacaaggaacactgtgaggaatatggaagaatgcta
caggctgaccccaacaaagtctcttcaagagcaaagaaaaggggcctgcctcagctgggg
accctgggagctggaaatcattatgctgagatccaggttgtggatgagatttacaacgag
tacgctgccaagaagatgggcatcgaccacaaagggcaggtgtgcgtgatgatccacagt
ggaagcagaggtctgggccaccaggttgccacagatgcactggtggctatggaaaaagct
atgaaacgggacaaaatcatagtaaatgatcgccagctggcatgtgccaggattgcctct
gcagagggacaggattacttgaagggaatggcagctgctggcaactatgcctgggttaac
cgctcttcyatgaccttcctaacacgacaggcctttgccaaagtcttcaacacaacccca
gatgaccttgacatgcatgttatctatgatgtgtctcacaacattgccaaagtggarcag
cacgtagtggatggcaaggagcgaactctgctggtgcacagaaagggatcaaccagggcc
ttccctcctcaccatcctcttattgctgttgattatcagctgactggacagcctgttttg
atcggtggcacgatgggcacctgtagctatgtccttactggcacagagcaaggcatgact
gagacctttggaactacttgccatggagctggtcgtgcactgtctcgagccaaatctcga
cgtaacttggacttccaggatgtgttggacaagctrgctgacatgggcattgccatccgt
gttgcttctcccaaactggtcatggaagaagcaccggagtcttataagaacgtgactgat
gtggttaacacctgccacgaagctggcatcagcaagaaagccattaaactgagacctatt
gctgttataaaaggctag
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