Malurus melanocephalus (red-backed fairy wren): 130583205
Help
Entry
130583205 CDS
T09178
Symbol
SMG5
Name
(RefSeq) nonsense-mediated mRNA decay factor SMG5
KO
K11125
protein SMG5
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130583205 (SMG5)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmea03019
]
130583205 (SMG5)
03032 DNA replication proteins [BR:
mmea03032
]
130583205 (SMG5)
Messenger RNA biogenesis [BR:
mmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Other surveillance factors
130583205 (SMG5)
mRNA cycle factors
Common to processing body (P body) and stress granule
130583205 (SMG5)
DNA replication proteins [BR:
mmea03032
]
Eukaryotic type
DNA Replication Termination Factors
Telomerase complex (animals)
130583205 (SMG5)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
EST1_DNA_bind
EST1
PIN_4
Motif
Other DBs
NCBI-GeneID:
130583205
NCBI-ProteinID:
XP_057238414
LinkDB
All DBs
Position
Unknown
AA seq
1049 aa
AA seq
DB search
MSQGGGAASESGEPEAKVLHTKRLYRAVVEAVHRLDLILGNKAAYQDVFKPENISLRNKL
RELCVKLMFLHPVDYGRKAEELLWRKVYYEVIQLIKTNKKHIHSRSTLECAYRTHLVAGI
GFYQHLLLYIQSHYQLELQCCIDWTHVTDPLIGCKKPMSASEKEMEWAQMACHRCLVYLG
DLARYQNELAGVDTELLAERFYYQALSVAPQIGMPFNQLGTLAGSKYYNVEATYCYLRCI
QSEVSFEGAYGNLKRLYDKAAKMYHQLKKCETRKLSPSKKRGKDIKRLLVSFMYLQSLLQ
PKSSSLDSELTSLCQSVLEDFNLCLFYLPSPPNLSSTSEDEEEYESGYSFLPDLLIFRMV
IICLMSVHSLKRAGSKQYSAAIAFTLALFSHLINHVNIRLQAELEEGENPVPAFQSDGTD
EQEPREPVNSIEKEAEAELVNHQPSEEQRKNDCKKSKKYSRLSCLRRRRHPQKVDESDLS
EGFDSDSSQGSIKGSDGSESGSEKSDEEAEAAFDVETDSDMNSQESRSDLEDMEDEPGEE
GSGQAKSGPKEALKNCVDGSGLGDSKSPSISKMEAVDPAVNGPASLSTNDASIASNLQAM
STQLFQTKRCFRLAPTFSNILLKPNSEPPALKDGVESKPCVNGDLEKPSLAEQDDVSDSE
ESISSNKSCRNERSLQEKLEIVTHEGLLLTVKVFLDWLRTNTDLIIMCAQSSQSLWNRLS
VLLNLLPSAADLQESGLALCDEVKDILSDAELPDLKANLLLPEDVALRNLPALKNAHKRF
NFEQDRPIFSAVEESVVRICCIRSFGHFITHLQGSILQFNSELGIFISIAQSEQDNLLHQ
AQAQFHMAAEEARRNRLMRDMAQLRLQLEVSQLEGSLQQPKAQSAMSPYLVPDTQALCQH
LALVKQLATSGRFIIIIPRTVIDGLDFLKKENAGARDSIRYLEAEFKKGNRYIRCQKDVG
KSFERHKLKRQDLDAWNLYKILDSCKQLTVSQGSGEDDTTGMVTIITGFQLEDPSTFSVP
MQSAIQAAANASIEIKNVLEFYKQWKEMG
NT seq
3150 nt
NT seq
+upstream
nt +downstream
nt
atgagccagggcggcggggccgccagcgagagcggcgagccggaggccaaggtgctgcac
accaagcggctgtaccgggcagtggtggaggccgtgcaccggctggatctcatccttggc
aataaggcagcttatcaggacgtcttcaagccagagaacatcagcttgaggaacaagttg
cgagagctgtgtgtgaagctgatgttcctccatccagtggattatggaagaaaagcagaa
gaactgctctggagaaaggtttactatgaagttatccagctcattaaaacaaataaaaag
cacatccacagtcgcagcaccctggagtgtgcatacaggactcatttggtggctggcata
ggattttatcagcacctcctgctctacatccagtcccattatcagctggagttgcagtgc
tgcatcgactggacacacgtgacagaccctctcataggctgcaagaaacccatgtctgca
tcagagaaagagatggagtgggcacagatggcgtgtcaccgatgtctggtttatctggga
gatctagctcgctatcagaatgaactggcaggtgtggacacagagctactggctgagcga
ttttactatcaagccctttctgttgcaccacaaattggaatgcccttcaaccaactgggg
acgttggcaggcagcaaatactacaatgtggaagcaacctactgctacttacgctgcatc
cagtctgaagtgtcctttgaaggtgcctaygggaacctgaagaggctatatgacaaagca
gccaagatgtatcaccagctaaagaaatgtgaaaccaggaagttgtctccaagcaagaaa
agaggaaaagacattaagaggttgctggtgagcttcatgtacctgcagagtcttttgcag
ccaaagagcagctccttggattctgagctgacatctctctgccagtctgtgctggaggat
ttcaacctgtgcttgttctacctgccatcccctcctaacctgagytcaactagtgaagat
gaagaagagtatgagagtggctactccttccttcctgatctcctgatctttcgcatggtg
atcatctgccttatgagtgttcacagcctcaagagggcaggttccaagcagtacagtgca
gccattgccttcaccctggctctcttctctcacctgatcaatcacgtcaatattcgcctc
caggcagagctagaagaaggtgaaaatccygtcccagcctttcagagtgatggcacagat
gagcaggagccacgggagcctgtgaactcgattgagaaggaagctgaagctgagttggtc
aatcatcagcccagtgaggaacagaggaagaacgactgtaagaaaagcaaaaaatactct
cgtctctcgtgtctgcgccgccgccgccatccycagaaggtggatgagagcgacctgagt
gagggctttgactctgactccagccaaggctccatcaagggcagtgatggctcagagagt
ggttcagagaagagtgatgaggaagcagaagctgcttttgatgtggagacagactctgac
atgaacagccaagaatctcggtctgacctggaggacatggaggatgaaccgggtgaggag
ggaagtggccaagccaaaagtgggcccaaagaggccttaaaaaactgtgtggatggcagt
gggctgggggactccaagagcccaagcatctctaaaatggaggctgtggatccagcagtc
aatgggccagcttccctgagcacaaatgatgcaagcatagccagcaatctccaggccatg
tccacccagctgttccagaccaaacgctgctttcgcttggctcccacattcagcaacatc
ctgctgaaacccaacagtgagcctcctgccttgaaggatggagtggagagcaagccatgt
gtcaatggagatctggagaagcccagcttggcagagcaagatgatgtgtctgactccgag
gaaagcatttcaagtaacaaatcctgcagaaatgagcgatcccttcaggagaagttggag
attgtgacccatgargggctgctgcttactgtcaaggtgttcctggactggctgaggaca
aacacggacctcatcatcatgtgtgctcagagctctcagagcctgtggaacaggctgtct
gtgctcctgaaccttctgccttctgctgcagacctgcaggaatcagggctggccctgtgt
gatgaagtcaaggacatcctgagtgatgctgagctcccagacctgaaggccaacctgctg
ctccctgaagatgtggccctgcgcaatctccctgctctgaaaaatgcacacaagaggttt
aactttgagcaggaccggcccattttctcagcagttgaggagtctgtcgtgaggatctgc
tgcattcggagctttggccacttcattacccacttgcaaggcagcatcctgcagttcaac
tcagagcttggtatcttcatcagcatagcacagtcagagcaagacaacttgctgcaccag
gcccaggcacagtttcacatggctgcagaggaagctcgtcggaacaggctcatgagagac
atggcccagcttcgactgcagctggaagtgtctcagctggagggaagtctccagcagccc
aaggcacagtcagccatgtctccttaccttgtcccggacacccaggccctctgccagcac
ctggctctggtcaagcagctggccactagtgggaggttcataatcatcatccctcggaca
gttattgatggcctggacttcctgaaaaaggagaacgccggtgctagggacagcattcgg
tatctggaggcagaatttaaaaagggaaacaggtacattcgttgccagaaagatgttggg
aagagctttgagaggcataaattgaagagacaagatttagatgcctggaatctctataaa
atactggacagctgcaaacaactgactgtgtcccaggggagtggagaggatgacaccacg
ggaatggtcaccatcatcacgggcttccagctggaggacccgagcacattctcagtgccc
atgcagtctgccatccaggcagccgccaatgccagcatagagataaaaaatgttctggag
ttctacaagcagtggaaagagatgggctga
DBGET
integrated database retrieval system
