Malurus melanocephalus (red-backed fairy wren): 130584028
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Entry
130584028 CDS
T09178
Symbol
PABPC4
Name
(RefSeq) polyadenylate-binding protein 4 isoform X1
KO
K13126
polyadenylate-binding protein
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03015
mRNA surveillance pathway
mmea03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
130584028 (PABPC4)
09123 Folding, sorting and degradation
03018 RNA degradation
130584028 (PABPC4)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmea03019
]
130584028 (PABPC4)
03041 Spliceosome [BR:
mmea03041
]
130584028 (PABPC4)
Messenger RNA biogenesis [BR:
mmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
130584028 (PABPC4)
mRNA cycle factors
Stress granule specific factors
130584028 (PABPC4)
Spliceosome [BR:
mmea03041
]
Complex C
Other components
Complex C specific factors
130584028 (PABPC4)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
RRM_1
MLLE
RRM_5
RRM_7
RBD_DEAH11
RRM_occluded
RRM_10
RBD_RDR6
DUF6262
POP1_C
Motif
Other DBs
NCBI-GeneID:
130584028
NCBI-ProteinID:
XP_057239752
LinkDB
All DBs
Position
Unknown
AA seq
629 aa
AA seq
DB search
MNTAASSYPMASLYVGDLHPDITEAMLYEKFSPAGPVLSIRVCRDMITRRSLGYAYVNFQ
QPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNLDKSIDNKALYDTFS
AFGNILSCKVVCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKERE
AELGAKAKEFTNVYIKNFGDDMDDERLKELFGKYGKTLSVKVMTDPTGKSKGFGFVSFEK
HEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQLKQERLSRYQGVNLYIKN
LDDTIDDEKLRKEFSPFGSITSAKVMLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGS
KPLYVALAQRKEERKAHLTNQYMQRIAGMRALPANTIINQFQPAAGGYFMPAVPQAQSRP
TYYAPNQMTQMRPNPRWQQGGRPQGFQGMPNAMRQSGPRPALRHLAPANAAASRGLPAAA
QRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSPHPGVQPLQAPQPAVHVQGQEPL
TASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRS
KVEEAVAVLQAHQAKKEAAQKVGVVAATS
NT seq
1890 nt
NT seq
+upstream
nt +downstream
nt
atgaacacggccgccagcagttaccccatggcctcgctgtacgtgggggatctgcacccc
gatatcaccgaggccatgctctatgagaagttcagcccggccggtcccgtgctgtccatt
cgggtctgcagggatatgatcacccgccgctccctgggctacgcctacgtgaacttccag
cagccggcagatgctgaacgagctctcgataccatgaattttgatgtgatcaaaggaaaa
cccattcgcatcatgtggtctcagagggacccttccctgaggaaatcaggggttggcaat
gtcttcattaagaacctggacaaatccattgataacaaggcactttatgacacattctca
gcgtttggaaacattttgtcctgcaaggtggtgtgtgatgagaatggctctaagggctac
gcttttgtgcactttgagacccaggatgctgcagatagagccatcgagaagatgaacggc
atgctgctcaacgaccgcaaagtatttgttgggagattcaagtctcgtaaagagagggag
gctgagttgggagccaaggcaaaggaattcaccaatgtgtatattaaaaattttggggat
gacatggatgatgaaagactaaaggagctctttggcaaatatggtaaaactctgagtgtt
aaagtgatgacagaccccactggaaaatccaaaggctttggctttgtaagctttgaaaaa
catgaagaggccaacaaggcagtggaagaaatgaacgggaaggatatcaatggraaaatg
ctgtttgtgggcagagcacagaagaaagctgagcgccaggcagagctgaaaaggagattt
gaacagctaaaacaggagaggctcagccggtatcagggtgttaacctgtacattaaaaac
ctagatgacactatagatgatgaaaaactgaggaaggagttctccccttttgggtcaata
acaagtgccaaggtgatgctggaagatggacggagcaaaggctttggctttgtctgcttt
tcctctccagaggaggccacaaaagctgtgacagagatgaacgggcgcatcgtgggttcc
aaacccctctacgtggccctggcacagaggaaggaggagaggaaggctcatctcaccaac
cagtacatgcagcgcatcgctggcatgagggccttgcccgccaacaccatcatcaaccag
ttccagcctgctgctggtggctatttcatgcctgccgtgccccaggctcagagcagaccc
acttactatgcacccaaccaaatgacccagatgagacccaacccacgctggcagcaagga
ggaaggcctcaaggtttccagggaatgcccaatgccatgcggcagtcggggccgcggcca
gccctgcgccacctcgcccccgccaacgccgccgcctcccggggcctcccagctgctgcc
cagagagtcggtgttggcacagcagcacagaatttggctcctcgtcctcctgtagctgcc
cctgctcccagggctgtccctccttacaaatacgcctccagtgtccgcagcccacacccg
ggcgtccaacccctgcaggcacctcagcctgcagttcatgtgcagggccaggagccactr
acagcctccatgctggctgctgcccctccccaggagcagaaacagatgctgggagaacgt
ttgttccctctgatccaagctatgcaccccagcctggctgggaagatcacgggaatgctg
ctagagattgacaactcagagctgctgcacatgctggaatctccagaatccctccgctcc
aaggtggaggaggccgtggcagtgctgcaggctcaccaagccaagaaagaagctgcccag
aaagtgggtgtggttgctgctacctcttga
DBGET
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