KEGG   Malurus melanocephalus (red-backed fairy wren): 130584738
Entry
130584738         CDS       T09178                                 
Symbol
PRPF4
Name
(RefSeq) U4/U6 small nuclear ribonucleoprotein Prp4
  KO
K12662  U4/U6 small nuclear ribonucleoprotein PRP4
Organism
mmea  Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:mmea00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    130584738 (PRPF4)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03041 Spliceosome [BR:mmea03041]
    130584738 (PRPF4)
Spliceosome [BR:mmea03041]
 Complex B
  U4/U6.U5 tri-snRNP components
   U4/U6 snRNP specific factors
    130584738 (PRPF4)
SSDB
Motif
Pfam: WD40_Prp19 WD40 WD40_CDC20-Fz WD40_WDHD1_1st Beta-prop_EML_2 EIF3I Beta-prop_CAF1B_HIR1 WDR55 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_TEP1_2nd Beta-prop_WDR75_1st ANAPC4_WD40 PRP4 Beta-prop_EML WD40_MABP1-WDR62_1st WDR90_beta-prop_4th NBCH_WD40 Beta-prop_SCAP Beta-prop_TEP1_C Beta-prop_DCAF4 Beta-prop_EIPR1 Beta-prop_IFT122_1st Beta-prop_IFT140_1st Beta-prop_Vps41 WD_LRWD1 WD40_like Beta-prop_WDR35_TULP_N WD40_RFWD3 Beta-prop_WDR19_1st Beta-prop_WDR11_1st
Other DBs
NCBI-GeneID: 130584738
NCBI-ProteinID: XP_057240881
LinkDB
Position
Unknown
AA seq 529 aa
MATARAPAARGGARPPEPPKPKPAEESDAPPAKRAPIFYGSLEEKERERLAKGESGLLGK
EGMKAAMEAGNINISSGEVFDLEDHMSERQAEVLAEFERRKRARQINVSTDDSEVKACLR
ALGEPITLFGEGPAERRERLRNILSVVGTDALKKTRKDDDRSKKSKEEYQQTWYHEGPRS
LKTARLWLANYSLPRAAKRLEEARLLKEIPEATRTSQRQELHKSLRSLNNFCSQIGDDRP
LSYCHFSPNSKLLATACWSGLCKLWSVPDCNLVHTLRGHSTNVGAIVFHPKATVSLDKKD
VSLASCAADGSVKLWNLESDEPVADIEGHSMRVARVMWHPSGRFLGTTCYDHSWRLWDLE
AQEEILHQEGHSKGVYDIAFHTDGSLAGTGGLDAFGRVWDLRTGRCIMFLEGHLKEIYGI
NFSPNGYHVATGSGDNTCKVWDLRQRKCIYTIPAHQNLVTGVRFEPNHGNFLLTGAYDNT
AKIWTHPGWSPLKTLAGHEGKVMGLDISLDGQLIATCSYDRTFKLWTAE
NT seq 1590 nt   +upstreamnt  +downstreamnt
atggccaccgcgcgggcaccggcggcgcgaggcggggcccggccccccgagccccccaag
cccaagcctgcagaggagagtgatgcacccccagccaagcgagcgcccatcttctatggg
agcctggaggagaaggagcgggagcgcctggccaagggcgagtcagggctgctgggcaag
gagggcatgaaggctgccatggaggctggcaacatcaacatcagcagtggggaggtgttt
gacctcgaggaccacatgagcgagcgccaggccgaggtgctggcygagtttgagcgccgc
aagcgcgcccggcagatcaacgtctccaccgatgactccgaggtcaaggcctgcctgagg
gccctgggggagcccatcacgctcttcggagaggggcctgcggagcgcagggagaggtta
aggaacatcctctcagtggtcggcacagatgcattaaaaaagaccaggaaagatgatgac
aggtcaaaaaagtccaaggaagagtatcagcaaacctggtaccacgagggccctcgcagt
ctgaaaacagccaggctgtggctggccaactactccctccccagggcagcgaagcggctg
gargaggctcggctgctcaaggaaattcctgaggccaccaggacatcccagaggcaggag
ctgcacaaatccctgcggtccttgaataacttctgcagtcagatcggggatgaccgcccg
ctgtcctactgccacttcagccccaactccaaactccttgccacagcctgctggagtggg
ctgtgcaaactctggtctgtgcctgactgcaacctggttcacaccttacgaggacacagt
accaacgtgggggcaattgtgttycaccccaaggccaccgtgtccctggacaagaaggac
gtcagcctggcctcgtgcgcagcygacggctctgtcaaactctggaacctggaaagtgat
gaaccggtggcagacatcgaaggacacagcatgagagtggcccgtgtgatgtggcacccg
tctgggaggttcctgggcaccacctgctacgatcactcgtggcgcctgtgggacctggag
gcacaggaggagatcctgcaccaggaggggcacagcaarggtgtctatgacatcgccttc
cacaccgacggctccctggctggcacgggaggtctggatgcctttggccgggtgtgggac
ctgcgcacaggacgctgtatcatgttcctggaggggcatctgaaggagatctacggcatc
aacttctccccaaacgggtaccacgtggccacgggcagtggggacaacacctgcaaggtg
tgggacctgcggcagaggaagtgcatctacaccatccctgcccaccagaacctggtcact
ggcgtccgcttcgaacccaaccacgggaatttcctgctgacgggtgcctacgacaacaca
gccaagatctggacccaccccggctggtccccgctcaagacactggcgggccacgagggg
aaggtgatgggcctggacatctccctggatgggcagctcattgccacctgctcctatgac
agaaccttcaagctctggacagccgagtag

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