Malurus melanocephalus (red-backed fairy wren): 130585357
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Entry
130585357 CDS
T09178
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1 isoform X1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea03013
Nucleocytoplasmic transport
mmea03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
130585357 (UPF1)
03015 mRNA surveillance pathway
130585357 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmea03019
]
130585357 (UPF1)
Enzymes [BR:
mmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
130585357 (UPF1)
5.6.2.5 RNA 5'-3' helicase
130585357 (UPF1)
Messenger RNA biogenesis [BR:
mmea03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
130585357 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
130585357 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
NPHP3_N
ATPase
nSTAND3
Helicase_RecD
DEAD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
130585357
NCBI-ProteinID:
XP_057241795
LinkDB
All DBs
Position
Unknown
AA seq
1120 aa
AA seq
DB search
MSVEAYGPSSQTLTFLDTEEAELLGADTQGSEFEFTDFTLPSQTQTPPGPGQAGPAQGQG
PPGAGQGAPGPLEAQVNGPDGILQNGAVDENVAKTSQLLAELNFEEDEEDTYYTKDLPVH
ACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPLGETVL
ECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDRCFLSW
LVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRYEDAYQ
YQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRLMQGDE
ICLRYKGDLAPLWKGIGHVIKVPDSSTDYGDEIAIELRSSVGAPVEVTHNFQVDFVWKST
SFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQVYA
VKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQTG
LKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYRAL
KRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQLI
LVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIFYE
GSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKITT
KLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDFII
LSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQKVL
VEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPSNM
YFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTGRG
GRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPELS
QDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3363 nt
NT seq
+upstream
nt +downstream
nt
atgagcgtggaggcgtacggccccagctcgcagaccctcaccttcctggacaccgaggag
gccgagctgctcggcgcagacactcagggctccgagttcgagttcaccgacttcaccctc
cccagccagacccagaccccgcccgggcccggccaggcggggcccgcacagggccagggg
ccccccggcgcggggcagggagcgccgggcccgctggaagcgcaggtgaatggacctgat
ggaatcctgcagaatggrgctgtggatgaaaatgtggccaagaccagccagctgctggca
gagctcaactttgaggaggatgaggaggacacctactacaccaaggatctccctgtgcac
gcctgcagttactgtgggatccatgaccctgcctgtgtggtttactgcaacaccagcaag
aartggttctgcaacggccgtggaaacacatctggcagccacattgtgaaccacctggtg
agagccaagtgcaaagaggtgactctgcacaaggatggacctctgggagagactgtcctg
gagtgctacaactgcggctgtcgcaacgttttcctgctgggcttcatcccagccaaggca
gactccgtggtggttctgctgtgcaggcagccgtgtgccagccagagcagcctgaaggac
atcaactgggacagctcccagtggcagcccctgatccaggaccgctgcttcctttcctgg
ctggtgaagattccatccgagcaggagcagctcagggcccgccagatcacagcccagcag
atcaacaaactggaggagctctggaaggaaaatccatctgcaaccctggaggacttggaa
aagcctggtgttgatgaggagccccagcatgtcttgcttagatatgaagatgcttatcaa
taccaaaatatatttggtcctctggtcaagcttgaggcagattatgacaagaaactcaag
gaatctcagacccaagataacatcacagtcaggtgggacctgggcctgaacaagaagagg
attgcttacttcactttgccaaagactgattcagacatgcgcctcatgcaaggagatgag
atctgcctgaggtacaagggagacctggcccccctgtggaagggaattgggcacgtgatc
aaagttcctgatagttctacagattatggtgatgagatagccatcgagctgaggagcagc
gttggagcccctgtggargtcactcacaacttccaggtggattttgtgtggaagtcgacg
tcctttgacaggatgcagagtgctctgaaaacctttgcagtggatgagacctctgtgtct
ggctacatctaccacaagctgctgggccacgaggtggaggatgtgatcatcaaatgccag
ctgccaaagcgcttcacggcgcagggactccctgacctcaaccactctcaggtgtatgct
gtgaaaactgtgctgcagcgtcctctgagccttatccagggtccccctggcactgggaaa
acggtgacatcggccaccatcgtgtaccacctggccaggcagggcaatgggcctgtgctg
gtgtgtgcccccagtaacatcgctgtggatcagctgacagagaagatccaccagactggc
ctcaaagtggttcgcctgtgtgccaagagtcgcgaggccatcgactcgcccgtgtccttc
ctggcactgcacaaccagatcaggaacatggacagcatgccagagcttcagaagctgcag
cagctgaaggatgagaccggrgagctctcgtctgcggatgagaagcgttaccgggcgctg
aagcgcacggcggagcgggagctgctcatgaatgcagatgtsatctgctgcacctgcgtg
ggagctggggatcccagactggccaagatgcagttccgctccatcctgatcgacgagagc
acccaggccaccgagcccgagtgcatggtgcccgtggtgctgggggcaaagcagctgatc
ctggtgggtgaccactgccagctggggcccgtggtgatgtgcaagaaggcggccaaggcg
gggctgtcgcagtcgctgttcgagcgcctggtggtgctgggcatccggcccatccggctg
caggtgcagtaccgcatgcaccccgcgctcagcgccttcccctccaacatcttctacgag
ggctctctgcagaacggcgtcactgcagctgacagggtgaaaaaaggctttgatttccag
tggccccagcctgacaaacccatgttcttctacgtgacccagggccaggaggagatcgcc
agctcaggcacctcttacttgaacaggaccgaagctgccaacgtggagaagatcaccacc
aaactgctcaaagctggcgccaagcccgaccagatcggcatcatcactccctacgagggc
cagcgctcctacctggtgcagtacatgcagttcagtggctccctgcacaccaagctctac
caggaagtggaaattgccagtgtggatgcyttccagggcagggagaaggatttcattatc
ctgtcctgtgtcagggccaacgagcaccagggaatcggcttcctcaacgaccccaggagg
ctgaacgtggccctgacgagagccaggtatggggtgatcatcgtgggcaatcccaaagcc
ctgtccaagcagcccctctggaatcacctcctcaattactacaaggagcagaaggtgctg
gtggagggacccctgaacaacctccgagagagcctsatgcagttcagcaaaccccgcaag
ctggtcaacaccatcaaccccggtgctcgtttcatgaccactgccatgtatgatgcacgg
gaggccatcatcccaggatctgtgtacgaccgcagcagccaagggcgtccatccaacatg
tacttccagacccacgaccagattgggatgatcagtgctggtcccagccacgtcactgcc
atgaacattcccatccccttcaacctggtcatgcccccgatgccacccccgggctacttt
ggccaggccaacgggcccgctgcaggccgtggggcacccaaagggaagacrggccgtgga
gggcggcagaagaaccgctttgggatccccggcaccagccagtccaacctccccaacagc
caggccagccaggacgtggtgtcccagcccttctcgcagggccccctgactcagggctat
atctccatgagtcagccctctcagatgagtcagcctgggctctcccaaccggaattatcc
caggacagttaccttggtgatgagtttaaatcccagattgacgtggcgctgtcacaggac
tcaacttaccagggagaacgagcatatcaacacggtggagtgacgggactgtcacagtat
tag
DBGET
integrated database retrieval system
