KEGG   Malurus melanocephalus (red-backed fairy wren): 130586590
Entry
130586590         CDS       T09178                                 
Name
(RefSeq) collagen alpha-1(II) chain
  KO
K19719  collagen type II alpha
Organism
mmea  Malurus melanocephalus (red-backed fairy wren)
Pathway
mmea04510  Focal adhesion
mmea04512  ECM-receptor interaction
mmea04518  Integrin signaling
Brite
KEGG Orthology (KO) [BR:mmea00001]
 09130 Environmental Information Processing
  09133 Signaling molecules and interaction
   04512 ECM-receptor interaction
    130586590
   04518 Integrin signaling
    130586590
 09140 Cellular Processes
  09144 Cellular community - eukaryotes
   04510 Focal adhesion
    130586590
 09180 Brite Hierarchies
  09183 Protein families: signaling and cellular processes
   00536 Glycosaminoglycan binding proteins [BR:mmea00536]
    130586590
Glycosaminoglycan binding proteins [BR:mmea00536]
 Heparan sulfate / Heparin
  Extracellular matrix molecules
   130586590
SSDB
Motif
Pfam: Collagen COLFI
Other DBs
NCBI-GeneID: 130586590
NCBI-ProteinID: XP_057243426
LinkDB
Position
Unknown
AA seq 1282 aa
MGPRGPPGPSGSPGPQGFQGNPGEPGEPGAAGPMGPRGPPGPPGKPGDDGETGKPGKSGE
RGPPGPQGARGFPGTPGLPGVKGHRGYPGLDGAKGEAGAPGAKGESGSPGENGSPGPMGP
RGLPGERGRPGPSGAAGARGNDGLPGPAGPPGPVGPAGAPGFPGAPGSKGEAGPTGARGP
EGAQGPRGESGTPGSPGPAGAPGNPGTDGIPGAKGSAGAPGIAGAPGFPGPRGPPGPQGA
TGPLGPKGQTGEPGIAGFKGEQGPKGETGPAGPQGAPGPAGEEGKRGARGEPGAAGPLGP
PGERGAPGNRGFPGQDGLAGPKGAPGERGPAGLAGPKGATGDPGRPGEPGLPGARGLTGR
PGDAGPQGKVGPTGAPGEDGRPGPPGPQGARGQPGVMGFPGPKGANGEPGKAGEKGLPGA
PGLRGLPGKDGETGAAGPPGPAGPAGERGEQGAPGPSGFQGLPGPPGPPGESGKPGDQGV
PGEAGAPGLVGPRGERGFPGERGSPGAQGLQGPRGLPGTPGTDGPKGATGPAGPSGAQGP
PGLQGMPGERGAAGIAGPKGDRGDVGEKGPEGAPGKDGARGLTGPIGPPGPAGPNGEKGE
SGPPGPSGAAGARGAPGERGEPGAPGPAGFAGPPGADGQPGAKGEQGEPGQKGDAGAPGP
QGPSGAPGPQGPTGVTGPKGARGAQGPPGATGFPGAAGRVGPPGPNGNPGPPGPPGSAGK
DGPKGARGDAGPPGRAGDPGLQGPAGPPGEKGEPGEDGPAGPDGPPGPQGLAGQRGIVGL
PGQRGERGFPGLPGPSGEPGKQGAPGSAGDRGPPGPVGPPGLTGPAGEPGREGSPGSDGP
PGRDGAAGVKGDRGETGPVGAPGAPGAPGAPGPVGPTGKQGDRGETGAQGPMGPSGPAGA
RGMPGPQGPRGDKGETGEAGERGLKGHRGFTGLQGLPGPPGPSGDQGAAGPAGPSGPRGP
PGPVGPSGKDGSNGMPGPIGPPGPRGRSGEPGPAGPPGNPGPPGPPGPPGTGIDLSAFAG
LGQPEKGPDPGRYLRADEAAPGLRPHDAEVDATLKALNSQIESIRSPEGSRKNPARTCRD
IKLCHPDWKSGDYWIDPNQGCTLDAIKVFCNMDTGETCVYPSPGSIPRKNWWSSKAKEKK
HVWFAETIHGGFHFSYGAEELPPNTAEVQLTFLRLLSSEGAQNVTYHCRNSVAYLDAASG
SLRKALLLQGSNDVELRADGGSRFAYSVLEDGCTKHTGKWGRTVIEYRSQKTSRLPIVDF
APLDIGGPEQEFGVDLGPVCFL
NT seq 3849 nt   +upstreamnt  +downstreamnt
atgggaccccgcggcccccccggcccgtccggctctcccggtccccaaggattccaaggc
aaccccggcgagcccggcgagcccggcgctgctggtccgatgggtccccgggggcctccg
ggacctcctggcaaaccgggtgacgacggcgagaccggcaaacccgggaaatccggagag
cgcggcccccccggtccccagggcgctcgtggcttccccgggacccccggcctccctgga
gtcaaaggccaccggggttaccccggcctggacggcgccaaaggagaggcgggagctcct
ggagcaaagggcgagtccggctccccgggcgagaacggctcccccggccccatgggtccc
cgcgggctgcccggagagcgaggacgccccggcccctcgggcgctgcgggcgctcgtggc
aatgacggcctccccggcccggccggacccccgggtcccgtcggccccgctggagccccc
ggattccccggtgcccccggctccaagggtgaagcgggtcccactggagcacggggaccc
gagggcgcccagggaccccgcggagaatccgggacccccggctcgcccggccccgccggc
gcccccgggaacccagggactgatggcatccccggagcaaagggctcggcgggcgcccca
ggcatcgcgggcgctccaggattccccgggccccgcggcccccccggaccccagggagcc
accggcccgctgggccccaagggacagacgggtgagcccggcatcgcagggttcaaaggc
gagcagggccccaagggagagacgggccccgcgggtccccagggcgcccccggaccggcc
ggcgaggaaggcaagagaggagcccggggagagcccggagcggccggaccattggggccg
cctggagagaggggtgctcctggcaaccgcggcttccctgggcaggatgggctggccggc
cccaagggggcaccgggtgagcgcggccccgcaggcctggccggccccaaaggagccact
ggagatcctgggcgccccggagagcccggcctgcccggggccaggggtctcaccggccgc
ccaggtgacgctgggccccaaggcaaagtcggccccactggtgcccccggcgaggacggg
cgccccggcccacccggcccacaaggggctcgaggccagcccggcgttatggggttcccc
ggtcccaaaggagccaatggtgagcctggaaaagctggggaaaaaggacttccaggagct
ccagggctgaggggacttcccggcaaggacggagagacgggagctgccggacccccagga
cctgctggccccgcaggggagagaggagagcaaggagcccccggcccctccggcttccag
gggctgccagggccaccaggtccccccggcgagagcggcaaacccggggatcagggcgtt
cctggagaagccggtgcacccggactggtcggtcccaggggcgagcgcggcttccccgga
gagcgcggctctcccggcgcccagggcctgcagggcccccgcgggctccccgggaccccc
ggcacggacggacccaagggcgccaccggccccgccggccccagcggagcgcagggaccc
ccggggctgcaggggatgcccggcgagagaggagcggccggcatcgccggacccaagggc
gacaggggagacgtcggagagaagggacctgagggagcccctggaaaggacggagctcgt
ggtctcacaggtcccatcggcccccctggccctgctggccccaacggcgagaagggcgag
tccggaccccctggcccatccggtgccgccggtgcccgcggtgcccccggagagcgcgga
gagcccggagcccccggccccgccggattcgccggccccccgggcgccgacggacagccc
ggagccaaaggcgagcagggagagcccggccagaagggcgacgccggagcccccggcccg
cagggaccctctggggctcctggcccacagggtcccactggcgtcactggacccaaagga
gcccggggtgctcagggcccccctggagccactggattccccggagctgctggacgtgtc
ggaccccccggccccaatggtaatcccggcccccccgggccccccggctccgcgggcaag
gacggccccaaaggtgctcggggcgacgcgggacccccgggccgggctggcgaccccggg
ctccagggccctgccggcccccccggcgagaagggcgagcccggcgaggacggccccgcg
ggcccggacggtccccccggtccccaaggtctggcgggccagcgcggcatcgtggggctg
ccggggcagcgcggcgagcgcggcttcccggggctgccgggaccctcgggagagcccgga
aaacagggagcgcccggctcggccggagaccggggaccccccgggcccgtggggccgccc
gggctgacgggaccggccggagaacccggacgggagggaagccccggctccgacggaccc
ccgggcagggatggtgcggccggagtgaagggtgatcgtggtgagaccggccccgtgggt
gcccccggtgctcccggcgctcccggcgctcccggccccgtgggacccactggaaaacag
ggagacagaggagagacgggcgcccaaggccccatgggtccctccggccccgccggtgcc
cggggaatgccgggtcctcaaggacctcgtggtgacaaaggagagacaggagargctgga
gagaggggcctgaagggacaccgcggcttcaccgggctccagggcctgcccgggcccccc
ggtccctctggagaccaaggcgctgctgggcccgcagggccctctggccccaggggtccc
cctggccctgtgggcccctcaggcaaggacggctccaatgggatgcccggccccatcggc
ccccccggcccccgcgggaggagcggcgagcccggcccggcgggyccccccgggaaccca
ggcccgcccggtccccccggtcccccyggcactgggatcgacctgtcggcgttcgcgggg
ctggggcagcccgagaagggccccgaccccgggcgctacctgcgggcggacgaggcggcg
ccggggctgcggccgcacgaygccgaggtggacgccaccctcaaggccctcaacagccag
atcgagagcatccgcagccccgagggctcccgcaagaacccagccaggacctgccgtgac
atcaaactctgccaccccgactggaagagcggcgattactggatcgaccccaaccagggc
tgcaccctggacgccataaaggtcttctgcaacatggacacgggggagacgtgcgtgtac
cccagccctggcagcatcccccgcaagaactggtggagcagcaaggccaaggagaagaag
cacgtctggtttgcygagaccatccacggcggcttccacttcagctacggcgcggaggag
ctgccccccaacacrgccgaggtgcagctgaccttcctgcggctgctgtccagcgagggc
gcccagaacgtcacctaccactgccgcaacagcgtggcgtacctggacgcggcctcgggc
agcctgcgcaaggcgctgctgctgcagggctccaacgacgtggagctgcgcgccgacggc
ggcagccgcttcgcctacagcgtgctggaggacggctgcacgaaacacaccgggaagtgg
ggcaggacggtcatcgagtaccgctcacagaagacctcgcgcctgcccatcgtggacttc
gctcctctggacattgggggccccgagcaggagtttggggtagacctcggccccgtctgc
ttcttgtga

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