Malurus melanocephalus (red-backed fairy wren): 130586827
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Entry
130586827 CDS
T09178
Name
(RefSeq) 3'-5' RNA helicase YTHDC2-like
KO
K20099
ATP-dependent RNA helicase YTHDC2 [EC:
5.6.2.6
]
Organism
mmea
Malurus melanocephalus (red-backed fairy wren)
Brite
KEGG Orthology (KO) [BR:
mmea00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
mmea03041
]
130586827
Enzymes [BR:
mmea01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
130586827
Spliceosome [BR:
mmea03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
RNA helicase-like proteins
130586827
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
Helicase_C
HA2_C
OB_NTP_bind
R3H
DEAD
AAA_19
HA2_N
nSTAND3
Ank_2
ATPase
AAA_22
NPHP3_N
Ank_4
PhoH
Ank
AAA_7
UvrD-helicase
AAA_30
AAA_29
AAA_16
AAA_23
ResIII
SRP54
Motif
Other DBs
NCBI-GeneID:
130586827
NCBI-ProteinID:
XP_057243718
LinkDB
All DBs
Position
Unknown
AA seq
1426 aa
AA seq
DB search
MSRPRNVPPRPPDGGTGGSGAPAAPGRGRGGKGLRDIRVDEEVEIAVNLALERFRYGEDT
EMEFPSSFTRTERKFVHRLCQSLGLISKSKGKGANRYLTVRKKNGLELTHAVMTCALTPG
TKHIIRTLIRNFPVTNKERTELLPKTERGNASAIESENKEVNKTSGRLSDGIPQVPVKRG
ESEFDSFRESLPVFEKQEEIVKIIKDNKVVLIVGDTGSGKTTQIPQFILDDCHKNGTPCR
IFCTQPRRLAALAVAERVAAERREKIGQTIGYQIRLESRVSPKTLVTFCTNGILLRTLMA
GDSTLSSVTHVIVDEVHERDRFSDFLLIKLRDVLQSQANLKLIISSAALDADLFIRYFGC
CPVIHIQGRPFEVKEMFLEDILRSTGYTNKEMVKYKKEKQQEEKQQSTLTEWCCAQENNS
KLERERPRSVPRATEECNLLSDGSDTVFNQLTEKDVNCLEPWLIKEMDSCLSDIWLHKDT
DAFAQVFHLILTENVSVDYRHSETSATALMIASGRGFLSQVEQLISMGASIHCRSSNGWM
AVDWAKHFGQTEVVDLLESYSASAGFGNLDESSLVRASGSDLSAEDRELLTAYHHSFDDE
KVDLDLIMHLLYNICHNSEAGAILIFLPGYDEIVSLRDRILFDDRRFADNAHRYQVFMLH
SNMQTFDQKKVLRSPPPGVRKIILSTNIAETSITVNDVVYVIDSGKVKEKSFDALSCVTM
LKMVWISKASAIQRKGRAGRCQPGVCFRLFSRLRFENMLEFQTPELLRMPLQELCLHTKL
LAPXNCPIVDFLMKAPDPPPALIVKNALQILKTIDAMDPWEDLTELGYHLTELPVEPHLG
KMVLCAXVLKCLDPVLTIACALAYRDPFVLPTLASQKXAAMLCRKRFTAGTFSDHMVLLR
AFQAWQKARSDGWERAFCEKNFLSQATMEIIVGMRTQLLGQLRASGFVRARGGADIRDAN
INSENWAVVKAALVAGMYPNLVHVDREKLVVTGPKEKKVRFHPTSVLSQPQYKKIPPVNG
QTAAVQALPTDWLIYDEMTRAHRIANIRCCSVVTPITVALFCGPARLPSNALQACPSSQG
DGVSNGSSDSEMEDRTTSNLSLLKLDEWLHLKLDSEAAGLLLQLRQKWHSLFLRRMRSPS
KSWSQVEEGIVRAVVAVLTAEEQSAGLQQPSGIGQRPRPVPSEDLRLASTWRSTNPRRDT
AETEFSDFSNAEKGLMKSTHSTLHQPRKYKRKNILHSKQTSDDRSDQSSLKSADSSSFPS
PCASPSSPISGKSSQLPSPRQNMPVRYFIMKSNNLQNIAISQQKGIWSTTPSNEQKLNGA
FLESSMVYLIFSVQGSGHFQGFARMGSAIGSEKSQDWGSSGFGGVFKVEWIRKESIPFQF
AHHLLNPWNDNKKVQISRDGQELEPQVGEQLLQLWDHIPLEGKKPN
NT seq
4281 nt
NT seq
+upstream
nt +downstream
nt
atgtcgcggccgaggaacgtccccccgcgaccgcccgatgggggcacaggcggctcgggc
gcccccgccgcgccgggccgaggccgaggcggcaaaggtctgagggatatccgtgtggac
gaggaagtggagatcgcggtgaatctggctctggagcggttccgctacggcgaggacacg
gaaatggaatttccatcttctttcactagaactgaaagaaagtttgttcaccggctctgt
cagtctcttggactgatatctaaaagtaaaggaaaaggagctaatcgatacctaactgta
agaaaaaagaatggattggaactaacacatgcagtaatgacttgtgccttaactcctggt
acaaaacacattattcgtactttaattcggaattttcccgtcacaaataaagaacgaaca
gaacttctgccaaagacagaacgaggaaatgcctctgccattgaatctgaaaacaaagaa
gtgaacaagacaagtggacgacttagtgacggtatccctcaggttccagtgaaaagaggg
gaatcagagtttgattccttcagggaatcactaccagtttttgaaaaacaggaagaaatt
gtcaaaataataaaggacaataaagttgttttgattgtaggagacactggatcaggaaaa
acaactcaaattcctcagtttattcttgatgactgtcacaaaaatggaactccctgccgt
atattttgcactcagccaagacgcttggcagcgcttgctgtggctgaaagagtggcagca
gaaagaagagaaaagattggccagacaattggttatcagatacgtttagaaagcagggtt
tctccaaagacactggtgaccttttgcactaatggcatcctgctgcgcacgctgatggca
ggagacagcaccctatcctccgtgacacatgttattgtggatgaagtacatgagagggat
aggttcagtgacttcttgctgataaaactgagagatgtgttgcaaagccaagctaattta
aaactaattatttccagtgctgctctagatgcagatctctttattaggtattttggatgt
tgcccagtaatacacatccaaggaagaccttttgaagttaaagagatgtttttggaggac
attttacgaagtactgggtatacaaacaaagagatggtaaagtacaaaaaagagaagcag
caagaagaaaaacagcaaagcacccttactgagtggtgttgtgctcaagaaaataatagt
aagctggaacgagagagaccaagatctgtcccaagggcaactgaagagtgtaatctgttg
agtgatggtagtgacacagtatttaatcaactgactgaaaaagatgtgaattgccttgaa
ccatggttaataaaagaaatggattcttgtctttctgacatctggttgcataaagatact
gatgcttttgctcaggtgtttcatctcattttaactgaaaatgtcagtgttgattacagg
cacagtgaaaccagtgcgactgcactaatgattgcttcagggagaggctttttgagtcaa
gtcgagcagctgatcagtatgggagcaagtatccactgcagatcatctaatggctggatg
gctgtggactgggctaagcactttgggcagactgaggttgttgacctgttggaatcctac
agtgcttcagcaggatttggaaatctggatgagagttccctcgtccgagcaagtggtagt
gacctcagtgcagaggacagagagctgttgacagcttatcatcacagttttgatgatgaa
aaagtggatctcgatctcattatgcacttactttataacatctgtcataactctgaggct
ggagcaattttaatatttcttcctggatatgatgagatagttagcctgagggaccgtatt
ctttttgatgacaggagatttgctgataatgctcacagatatcaggttttcatgcttcat
tcaaatatgcagacttttgatcagaagaaagtgcttagaagtcctcctcctggtgtgcgc
aaaataattctttctacaaatattgcagaaaccagcataactgtcaatgatgttgtatat
gttattgactcaggcaaggtgaaagagaagtcttttgatgcactgagttgtgttacaatg
ttaaaaatggtgtggatttcaaaggccagtgctatccagagaaaaggcagggctgggcgc
tgtcagcctggagtctgttttcgtctcttcagcaggctccgctttgaaaatatgttggaa
tttcagactccrgaacttttaagaatgccacttcaggagctttgtttacacacaaaactt
ctggctccartaaactgtccaattgttgactttcttatgaaagctcctgatcctccacca
gctttaattgtgaaaaatgctctgcaaatactcaagactatagatgccatggacccttgg
gaagacctcactgaacttggttaccatctcactgaactgccagtggagccgcacctcggt
aaaatggtgttgtgcgccrtcgttttgaagtgcctggatcctgttcttaccattgcttgt
gctcttgcctaccgagacccttttgtgctgcccacgctggcctctcaaaagygtgcagcc
atgctgtgcaggaagcgttttactgcggggacattcagtgaccacatggtgcttctcagg
gcttttcaggcgtggcagaaggcgcgcagtgatggctgggagagagccttttgtgaaaag
aacttcctgtctcaagccacaatggaaatcattgtaggaatgagaacacagttgcttggc
cagcttagagcctcaggttttgttagagccagaggaggagctgatattagagatgctaat
attaactctgaaaactgggctgtagttaaagctgccttagtggctgggatgtatcccaat
cttgtgcatgtggacagagagaagcttgttgtaactggaccaaaggagaagaaagtgcga
tttcatcctacctctgttctcagtcaacctcagtataaaaagattcccccagtgaatggc
caaactgcagctgttcaggcactccctacagactggcttatatatgacgaaatgacgaga
gctcacaggatagcaaacatcaggtgctgttctgttgtaacacccatcactgtggcactc
ttctgcggaccagctaggttaccaagtaatgctttacaggcatgtccatcctcacaagga
gatggggtatctaatggtagcagtgacagtgagatggaggacagaacaacttctaattta
tctctgctgaagctagatgagtggctccacctcaaactggactctgaagctgctggtttg
ctgttgcaactcagacaaaagtggcatagcttatttctgcgtcgtatgcgatctccttct
aaatcttggtctcaagttgaggaaggaattgtaagggcagttgtggctgttttaactgct
gaagaacagtctgcaggtttgcagcagccttcaggaattggtcagagaccaagacctgtg
ccttctgaagatcttcgtttagcatctacgtggaggtcaactaaccccagaagagacaca
gcagaaacggaattctcagacttctctaatgctgaaaaaggtctgatgaagtctacacat
tctacacttcaccagccaaggaagtacaaacgaaaaaacattttgcactccaaacaaacc
tcagatgacaggtcagatcaatcatcgctgaaatctgcagacagcagtagctttcctagc
ccctgtgctagtccrtcttctccaatatctggaaagagttcccarttaccttcaccaaga
caaaatatgccagttcggtactttataatgaaaagtaacaacttgcagaacatcgctatt
tctcagcagaagggtatatggtccactacaccaagtaacgaacaaaaactgaatggagcc
tttttggagagcagcatggtttacttaatattttctgttcaaggatctggacacttccag
ggttttgctagaatgggttctgcaatagggtctgagaaaagtcaggactggggatcttct
ggatttggaggtgtatttaaggtggagtggatccgaaaagaaagcattccttttcagttt
gcacaccatttgctcaacccttggaatgacaataagaaagtacaaataagcagagatggc
caggagctggaaccacaggttggagagcagttgctgcagctttgggaccatattcctttg
gaagggaaaaaacccaactga
DBGET
integrated database retrieval system
