Methylophilus medardicus: FIU01_01665
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Entry
FIU01_01665 CDS
T10472
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmec Methylophilus medardicus
Pathway
mmec03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmec00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
FIU01_01665 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmec03021
]
FIU01_01665 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmec03400
]
FIU01_01665 (rpoC)
Enzymes [BR:
mmec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
FIU01_01665 (rpoC)
Transcription machinery [BR:
mmec03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
FIU01_01665 (rpoC)
DNA repair and recombination proteins [BR:
mmec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
FIU01_01665 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Biotin_lipoyl_2
Apocytochr_F_C
RPOC_hybrid
DUF3618
Motif
Other DBs
NCBI-ProteinID:
QDC43352
UniProt:
A0A5B8CQ34
LinkDB
All DBs
Position
347535..351794
Genome browser
AA seq
1419 aa
AA seq
DB search
MKALLDLFKQVTQEEEFDAIKIALASPEKIRSWSYGEVKKPETINYRTFKPERDGLFCSK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSL
PSRLGMVLDIALRDIERVLYFEAFIVIDPGMTPLTRGQLLTEDDYLAKVEEYGDEFNAVM
GAEAVRELLRTMDIEREIERLRSELSATSSEAKIKKIAKRLKVLEAFQKSGIKPEWMILE
ILPVLPPELRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLELKAPEIIVRNEKRMLQ
EAVDSLLDNGRRGKVMTGANKRPLKSLADMIKGKGGRFRQNLLGKRVDYSGRSVIVVGPT
LKLHQCGLPKKMALELFKPFIFHKLEVLGLATTIKAAKKKVEEEGPEVWDILEDVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCSAFNADFDGDQMAVHVPLSLEAQMEA
RTLMLASNNVLSPANGEPIIVPSQDIVLGLYYMTREKVAARGEGMIFSDIKEVQRVYDQG
LIDLHARVTVRIREFELDVAGQKIEKINRYNTTVGRALLSEILPPGLPYSYIDKALKKKE
ISRLINASFRKVGIRETVIFADKLMYTGYSYATKAGISISINDMLVPPEKEQLIAAADAE
VKEIEDQYVSGLVTQGERYNKVVDIWGRAGDKVADAMMKQLREEDVKDADGNVVMKDGKA
VRQESFNAIYMMADSGARGSAAQVRQLAGMRGLMAKPDGSIIETPIKANFRDGLNVLQYF
ISTHGARKGLADTALKTANSGYLTRRLVDVTQDLVVTELDCGTVEGLVTKALVKGGEVVE
PLHDRILGRTSALDVLHPETQEVIFPAGTLLGEDEVEKIDALGIDEVKVRTALTCDTRYG
ICAKCYGRDLGRGKLISMGEAVGVIAAQSIGEPGTQLTMRTFHIGGAVSRAASVSQVESK
SNGVLSFTSNMRYVTNSRGEQIVISRNGEVIIADDNGRERERHKVPYGATLTVTDGKTVK
AGQALATWDPHTRPIITEYAGRVKFENVEEGVTVAKQVDEVTGLSSLVVIDPKQRAGSTK
GLRPQVKLLDANGVEVKIAGTETSVNVTFQLGCIITVKDGQEVGVGEVLARIPQESSKTR
DITGGLPRVAELFEARSPKDAGMLAEVTGTVSFGKDTKGKQRLVITDLDGLTSEFLIAKD
KHVTAHDGQVVTKGETIVDGPADPQDILRLQGREALARYIIDEVQDVYRLQGVKINDKHI
EVIVRQMLRRVKVQDAGDTGFIPGEQVERADLLTENERVVAENKRPSTFEYVLLGITKAS
LSTDSFISAASFQETTRVLTEAAILGKRDDLRGLKENVIVGRLIPAGTGLAYHESRKRAA
IASLTPNVAAPSEALLAAEAMFASEEVVEEIAVDDQPAE
NT seq
4260 nt
NT seq
+upstream
nt +downstream
nt
atgaaagcgttattagatttatttaaacaggttacgcaagaagaagagttcgacgcgatt
aagatcgcgctggcttcacctgaaaaaatccgttcatggtcctatggcgaagttaaaaag
ccagaaacgatcaactaccgtacttttaaaccagagcgtgatggtttgttctgctccaaa
atctttggcccaatcaaagattacgagtgtctgtgcggtaaatataagcgtttgaagcat
cgcggtgtgatctgcgaaaaatgcggcgttgaagtgaccttgagcaaagtgcgccgcgag
cgtatgggccacatcgagttggcctcaccggtggcacacatctggttcctaaagtcctta
ccaagccgtttaggcatggtgttggatattgcattgcgcgacatcgaacgtgtgctgtat
tttgaagcattcatcgtgatcgacccaggcatgacaccactgacacgtggccagttgctg
actgaggacgactacttagccaaagttgaagaatatggtgatgagttcaatgccgtcatg
ggtgctgaagcggtgcgtgaactgttgcgcaccatggacatcgagcgtgaaatcgaaaga
ttgcgtagtgagttgtctgccaccagttcagaagccaagatcaaaaagatcgctaaacgt
ctgaaagtgttagaagcattccagaaatcagggatcaaacctgagtggatgattctggaa
atcttgccagtgttgccgcccgaactgcgcccgctggtgccgctggatggtggtcgtttc
gcgacgtctgacctaaacgatctgtatcgtcgtgtgattaaccgtaacaaccgtttgaag
cgtttgctggagttgaaggcgccagaaatcatcgtgcgtaacgaaaaacgcatgctgcaa
gaagcggtggactcactgctggataacggccgtcgcggtaaagtgatgaccggtgctaac
aagcgcccattgaaatcattggcagacatgattaaaggtaaaggcggtcgtttccgtcag
aacctgctgggtaaacgcgtggactactccggtcgttccgtgattgtggtcggccctacc
ttaaaactgcatcagtgcggtttgccgaaaaaaatggcgctcgagttgttcaaaccgttc
attttccacaagctggaagtattaggtttggccacaaccatcaaggccgccaagaagaaa
gtggaagaagaaggaccagaagtctgggatattcttgaggacgtgatccgcgagcatccg
gtgttgttgaaccgtgcgccgacgctgcaccgtttgggtatccaagcttttgagccagtt
ctgatcgaaggtaaagcgattcagctgcacccattggtgtgttcagcctttaacgctgac
tttgacggtgaccaaatggcggtacacgtgccattgagccttgaagcgcaaatggaagca
cgcactttgatgctggcatccaacaacgtgctgtcgccagccaacggcgagccaatcatt
gtgccatcacaagatatcgtgttgggtctgtactacatgacccgcgaaaaagtggctgca
cgtggcgaaggcatgatcttcagtgatattaaagaagtgcagcgcgtttatgaccaaggc
ttgattgatttgcatgccagagtcactgtgcgtattcgtgagttcgagctggatgtagcg
ggccaaaagattgagaaaatcaaccggtataacaccaccgtcggtcgtgcattgctgtct
gagatcttgccaccaggcttgccatacagctacatcgacaaggcattgaagaaaaaagaa
atttcacgcctgattaacgccagcttccgtaaagtgggtatccgtgaaacggtgattttt
gccgacaaattgatgtacaccggttactcgtatgcgacaaaagcgggcatctcgatcagc
attaacgacatgttggtgccaccagagaaagagcaattgattgcagcggctgatgctgaa
gtgaaagagatcgaagaccaatatgtctccggtttggtcacccaaggcgagcgctacaac
aaagtggtcgatatctggggtcgcgcaggtgacaaagtggctgacgccatgatgaaacag
ttgcgtgaagaagatgtgaaagatgctgacggtaatgtggtcatgaaagacggcaaggca
gtgcgtcaggagtcgtttaacgcgatttacatgatggccgactcaggtgcccgtggttct
gcggcacaggtgcgtcagctggccggtatgcgtggtctgatggcgaaaccggatggctcc
attattgaaacaccgattaaagccaacttccgtgatggtttgaacgtgttgcaatacttc
atttcgacacacggtgcacgtaaaggtctggcagatacggcgttgaaaacagcgaactca
ggttatctgacccgtcgtctggttgacgtgacgcaagacttggttgtgactgaactcgac
tgcggtaccgttgagggcttagtgactaaagcgttagtcaaaggtggtgaagtggtcgag
ccgttgcatgaccgtatccttggtcgtacttcagcgctggatgttctccaccctgaaaca
caagaagtcattttcccagcgggtacattgcttggtgaagacgaagttgaaaaaattgat
gccttgggtatcgatgaggtcaaagtgcgtactgcgctgacttgtgacactcgctatggt
atttgtgctaagtgttatggtcgtgacttgggtcgtggcaagctcatcagcatgggtgaa
gccgttggcgtgattgcggcgcaatccattggtgaaccaggcacacagttgaccatgcgt
accttccacatcggtggtgcggtgtctcgtgcggcttctgtctctcaagtggagagtaag
tctaatggtgtgttgagctttacctctaacatgcgttatgtcacaaactctcgcggtgag
caaatcgtcatctcacgtaatggtgaagtgattattgcagatgacaatggacgtgagcgc
gaacgtcataaagtgccttatggcgcgactttgacagtgaccgatggtaaaacggtcaag
gcgggtcaagcattggcaacttgggatccacatacccgtcctatcattactgaatacgct
ggtcgtgtgaagtttgaaaacgttgaagaaggcgtgacggtcgctaaacaggtggatgaa
gtgactggtctatcatcactcgtggtgattgatccgaagcaacgtgcgggttcaaccaaa
gggttgcgtccgcaggttaagttgttagatgccaatggcgtagaagtgaagattgccggg
acagaaacttccgtcaacgtgaccttccagctgggttgcattattacggtgaaagatggt
caagaagtaggcgtgggtgaagtgcttgcacgtatcccacaagaatcttcgaaaacccgt
gatattaccggtggtctgccacgcgtcgccgaattgtttgaagcacgctcaccaaaagat
gccggtatgttggctgaggtgacaggtacggtttcctttggtaaggataccaaaggtaag
caacgtctggtgattactgaccttgacggcttgaccagcgagttcttgattgccaaggac
aagcacgttactgcgcacgatggccaagtggtgaccaaaggtgaaacgattgtcgatgga
cccgctgatcctcaggatattctgagactgcaaggtcgcgaggcgctggcacgttacatc
attgacgaagtgcaagacgtttatcgtttgcaaggcgtgaagattaacgataagcacatc
gaagtgattgtgcgtcagatgctgcgtcgcgtgaaagtgcaagacgcgggcgatactggc
ttcattccgggcgagcaagttgagcgcgctgatttgttgacagaaaacgaacgcgtagtg
gccgaaaacaaacgtccatcaaccttcgagtatgtgttgttgggcattaccaaagcttcg
ttgtctacagattcatttatctcggcggcatcgttccaagaaacaacgcgtgtactgacc
gaagcagccattttgggcaaacgcgacgatctgcgtggcttgaaagaaaacgtgattgtg
ggtcgtttgattccagccggtaccggtttggcttatcacgagtctcgcaaacgtgcggcg
attgcgtcattgacgccgaacgtagctgcaccgtctgaggcattattggcggcagaagcc
atgttcgcatccgaagaagtagtagaggaaattgcagtagacgatcagccggccgagtaa
DBGET
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