Methylophilus medardicus: FIU01_02540
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Entry
FIU01_02540 CDS
T10472
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mmec Methylophilus medardicus
Pathway
mmec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU01_02540
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmec03019
]
FIU01_02540
Enzymes [BR:
mmec01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
FIU01_02540
Messenger RNA biogenesis [BR:
mmec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
FIU01_02540
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25_NTPase-like
P-loop_SecA
ERCC3_RAD25_C
AAA_22
Sacchrp_dh_NADP
DUF2529
Motif
Other DBs
NCBI-ProteinID:
QDC43515
UniProt:
A0A5B8CQF2
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All DBs
Position
517431..518918
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AA seq
495 aa
AA seq
DB search
MSLETPIVNITFADLNLCAPVLRAIADAGYTSPTPIQAQAIPYVLRGGDLLAGAQTGTGK
TAGFTLPILHRLSEKPLAHAVKGKPRCLILSPTRELAAQIGESVTTYGKYLPLKSMVVFG
GVGINPQINRLSKPLDILVATPGRLLDLVQQKALDLSAIEILVLDEADRMLDMGFIHDIK
KVLAMLPKKRQNLLFSATFSDDIKRLADNLLNSPDLVEVARRNTSNALIEQSVHMVPQAH
KREMVSYLIKHHDWQQVLIFTRTKHGANRLAEKLVKDGIPAMAIHGNKSQNARTAALAQF
KAGTIPALVATDIAARGLDIDQLPQVVNFELPNVPEDYVHRIGRTGRAGATGAAISLVDR
EELGMLKDIEKLIKREIPRVQVEGFVPPAKNSEEPERPARVQQNGRQRQATQHKPAQARP
AAKQAQPANAPRGQRPAAGKPAQPKSGQTNQAPAQTRQGAAKSPHANKPQGALFSARPGG
NASGRQGQQAAPKRG
NT seq
1488 nt
NT seq
+upstream
nt +downstream
nt
ttgtccttagaaactcccattgtaaacattacgtttgctgatttaaatttgtgcgcgcct
gtgttgcgcgcaattgccgatgccggttatacctcacccacgccgattcaggcacaggcg
attccatacgtgctacgcggcggcgatttgttggccggcgcgcaaaccggcactggtaaa
acggctgggtttactttgcctattttgcaccgtttgtctgagaaaccgctcgcacatgcg
gtcaaaggcaagccgcggtgtttgattctttcgcctacccgtgaactagcggcgcaaatt
ggcgagtctgtcaccacttatggcaaatatctgccgctgaaaagtatggtggtgtttggt
ggtgtggggattaatccgcaaatcaatcgtttgagtaaaccgctggatattttggttgcc
acccccggccgcttgctcgatctggtgcaacaaaaagcactcgacttgtctgccattgaa
atcctggtgctcgatgaggctgaccgcatgctcgacatgggctttattcatgacatcaaa
aaagtgttggccatgttgcctaaaaaacggcaaaacctgttgttttccgcgaccttttcg
gatgacattaaacgattggcggataatttactcaacagcccggacttggtcgaggtggct
cgccgcaacacatcgaatgccttaatcgaacaaagcgtgcacatggtgccacaagcgcat
aaacgcgaaatggtcagttatttgattaaacaccatgattggcaacaagtgctgattttt
acccggaccaagcatggcgctaaccgattggctgaaaaactggtcaaagatggcatccca
gcgatggccattcatggcaacaaaagccagaatgcacgtaccgccgcacttgctcagttt
aaagcgggcacgattccggcgctggttgccactgatatcgcagccaggggcttggatatt
gatcaactgccgcaagtggtcaactttgaattgccgaatgtgcccgaagattatgtgcat
cggattggccgtaccggtcgggccggggcgaccggcgctgcgatttcgttagtggatcgc
gaagagctggggatgcttaaagacattgaaaaactgatcaagcgcgaaatcccgcgagta
caagtggaaggctttgtgccgccggcaaaaaacagcgaagaaccagagcggcctgcgcgc
gtgcaacagaacggacgtcagcgtcaggcaacgcaacataagccggcacaagcgcggcca
gccgctaagcaggcgcagccggcaaacgcaccacgtggtcaacgaccagcagcaggcaag
cctgcccagcctaagtcgggtcaaaccaaccaagccccagcgcaaacacgtcagggcgcg
gctaaatcaccacacgctaacaagccacaaggtgccttgtttagtgcgcgtccgggcggc
aatgcttcgggtagacagggccagcaagccgcgccaaaacggggctaa
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