Methylophilus medardicus: FIU01_04115
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Entry
FIU01_04115 CDS
T10472
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mmec Methylophilus medardicus
Brite
KEGG Orthology (KO) [BR:
mmec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mmec03009
]
FIU01_04115 (rlmD)
Enzymes [BR:
mmec01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
FIU01_04115 (rlmD)
Ribosome biogenesis [BR:
mmec03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
FIU01_04115 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
TRM5-TYW2_MTfase
Methyltransf_25
MTS
Methyltransf_11
Methyltransf_15
TRAM
Methyltransf_23
Methyltr_RsmB-F
PCMT
CMAS
PrmA
Cons_hypoth95
Motif
Other DBs
NCBI-ProteinID:
QDC43783
UniProt:
A0A5B8CRA6
LinkDB
All DBs
Position
834176..835549
Genome browser
AA seq
457 aa
AA seq
DB search
MRNNRQRSSNLSFAARAAQAPRIATIESLDQEGRGVTHVDGKVIFVEGALPFEEVKFVSH
HVKATYELATTVEVIKPSSQRVTPGCVYFGTCGGCAMQHLEFSAQVAAKQRMLEADLWHI
GRVRPEKMLPPIQGTPWHYRHKARLRVRYVEKKGGVLVGFNEKGTSYVTHMDSCEVLTQP
VSDLIVPLKALIGQLSIKQSVPQIELAVGEDATVLVFRIMEALTDADVALLQTFEYTYGA
QVWTQTKGPDTVKPLFSHGDKLHYSLPEYNLQYPFSPIEFTQVNPAINRVMIRRAMQLLQ
PQAGERIADFFCGLGNFTLPIARSGASVYGVEGAQALVKRAVENAQLNQVSQVEFAESDL
FDMTTESLQALGAFDKWLVDPPRDGAMALMKALPDAEDTVATHAPTRIVYVSCNPATLAR
DAAILTQYKGYRLTAAGVMNMFPHTAHVESIALFEKI
NT seq
1374 nt
NT seq
+upstream
nt +downstream
nt
atgagaaacaaccgtcaacgatcttctaatctgtcttttgccgcgcgcgcggcgcaggcg
ccccgtattgctacgattgaatcccttgaccaagaaggtcgtggagtcacccatgtcgat
ggcaaagtcatttttgttgagggggccctgcctttcgaagaggtgaagtttgtctcacac
catgtcaaggctacctatgagttggcgaccacggtggaggtgattaaaccatccagccag
cgcgtgacgccagggtgtgtttattttggcacctgtggtggctgtgccatgcaacatctg
gagttttctgcgcaggtggctgccaagcagcgcatgcttgaagccgatttatggcatatc
ggtcgtgttcgcccggaaaaaatgctaccaccgattcaaggcacgccttggcactatcgg
cacaaagcccgcttgcgtgtccgctatgtggagaaaaaaggcggcgtattggtcggcttt
aatgaaaagggcaccagctatgtgacccacatggatagctgcgaggtgctgacccagccg
gtctcagacctgattgttcccttgaaagcgctgatcggccaattgtctattaagcagtct
gtgccacaaattgagttggcggtgggcgaagatgcaaccgtgttggtgtttcgtattatg
gaagcgctgaccgatgccgatgtcgcacttttgcaaacgtttgaatacacctacggcgca
caagtttggacacaaaccaaagggccggatacggtcaagccattgttcagccatggcgat
aagctgcattacagcttgcctgaatataatttgcagtatccattcagccccattgagttt
acacaggtgaatccggccattaaccgggtcatgattcgacgtgccatgcagctgttacaa
ccacaggcgggtgagcgtattgccgactttttttgcggcttaggtaactttacgttgccg
attgcgcgtagtggcgccagtgtctatggcgttgaaggcgcccaagctctggtgaaacga
gcggtggagaacgcccagctcaatcaggtgagtcaggtggagtttgctgagtcagatcta
ttcgacatgaccaccgaatccttgcaagccttgggggcttttgacaagtggctggtggat
ccgccgcgagatggggcgatggcgttgatgaaagcgttaccggatgctgaggatactgta
gccacccatgcgccgacgcgcattgtttatgtgtcgtgtaatcctgccaccttggcccgg
gatgctgcgattctgacgcaatataaaggctatcgtctgacggcggccggggtgatgaat
atgttcccgcataccgcgcacgtagagtctatcgcgctgtttgagaaaatctaa
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