Methylophilus medardicus: FIU01_05080
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Entry
FIU01_05080 CDS
T10472
Symbol
uvrB
Name
(GenBank) excinuclease ABC subunit UvrB
KO
K03702
excinuclease ABC subunit B
Organism
mmec Methylophilus medardicus
Pathway
mmec03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
FIU01_05080 (uvrB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmec03400
]
FIU01_05080 (uvrB)
DNA repair and recombination proteins [BR:
mmec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
FIU01_05080 (uvrB)
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
FIU01_05080 (uvrB)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
AAA_30
DALR_1
Kinesin
SLFN-g3_helicase
AAA_22
Sigma70_ner
DUF87
Motif
Other DBs
NCBI-ProteinID:
QDC43955
UniProt:
A0A5B8CSU6
LinkDB
All DBs
Position
1026657..1028690
Genome browser
AA seq
677 aa
AA seq
DB search
MIVTFPGSKYELHQPFPPAGDQPQAIEKLTQGIEDGLKFQTLLGVTGSGKTYTMANVIAR
IGKPAIVMAPNKTLAAQLYSEFREFFPNNAVEYFVSYYDYYQPEAYVPSRDLFIEKDSSI
NEHIEQMRLSATKALLEREDAIIVATVSAIYGIGDPGEYHGMVLHIHQGKKITQKDVVAQ
LIAMQYDRNDFDFSRGCFRVRGDIIDVFPSENSETAVRISLFDDEIDTIQLFDPLTGQVF
SKIHNFRIFPSSHYVTAREATVRAMETIKEELRQRVSFFLSENKLVEAQRIEQRTRFDLE
MLNEIGFCKGIENYSRHLTRRNPGDPPPTLIDYLPEQALMIIDESHVTVPQVGGMYLGDR
SRKANLVDYGWRLPSAMDNRPLKFEEFERIMRQCVFVSATPADYEKNHQQQVVEMIARPT
GLVDPEITVKPADTQVDDLLGEIKLRVAVGERVLATTLTKRMSEDLTDYLSEHGVKVRYL
HSDIDTVERVEIIRDLRLGEFDVLIGINLLREGLDIPEVSLVAVLDADKEGFLRSERSLI
QTAGRAARNLNGKVIFYGNRITRSMKLAMDEADRRRKIQLAFNAEHGIVPKGVTKRIKDI
IDGVYDKDEAQRERKAAQEQANYENMSEKNLTKELKRIEKAMHDAAKNLEFEKAAQFRDQ
LKKIKLQAFGAEVEDLK
NT seq
2034 nt
NT seq
+upstream
nt +downstream
nt
gtgatcgtcactttccctggcagtaaatatgaattgcaccagccttttccgcccgctggc
gatcaaccgcaagccattgaaaagctgactcaaggcattgaagatggtttgaaatttcaa
acgctgcttggcgtgactggctctggtaaaacctacaccatggccaacgtgatcgcgagg
attggtaaaccagccattgtgatggcgccaaacaaaacgctggctgcgcagttatatagc
gaattcagggagttctttcccaataatgccgtcgagtatttcgtcagctattacgattat
taccagcctgaagcctacgtgccctcgcgagatttatttatcgaaaaagactctagcatc
aacgagcatattgagcagatgcgtttatcggccaccaaggcgctgcttgagcgcgaagat
gccatcattgtcgccaccgtctctgccatttatggtattggagatccaggcgaatatcac
ggcatggtgctgcatatccatcaagggaaaaaaatcacccaaaaagacgtggttgcgcaa
ttgattgccatgcaatacgaccgcaacgattttgattttagccgtggttgttttcgcgtc
cgcggcgatatcattgatgtgtttccctcagaaaacagtgaaaccgcagtgcgtatcagt
ttgtttgatgatgagatcgacacgattcagctgtttgatccgctcaccggtcaggttttc
agcaaaatccataactttcgcattttcccgtccagccattatgtgaccgcgcgtgaagcc
acggtgcgtgccatggagacgattaaagaagaattgcgccagcgcgtgagttttttcttg
agtgaaaacaaactggttgaagcacaacgaatcgagcaacgcacccgctttgaccttgaa
atgctgaacgagattggcttttgtaaaggcatcgaaaactatagccgtcatttgactcgg
cgtaaccccggcgatccaccacccaccttgattgattatctccccgagcaggcattgatg
atcattgatgagagccatgtcaccgtgccacaagtgggcggcatgtatttgggtgaccgt
tctcgcaaggccaatctggtggattatggctggcgtttaccctctgccatggataaccgg
ccgctcaaatttgaagagtttgaacgcatcatgcgtcaatgcgtgtttgtctcggccacc
ccggctgactatgaaaaaaatcaccagcagcaagtggtcgaaatgattgcgcgacccact
ggcttggtagatcctgaaatcactgtcaaaccagccgatacgcaagtggacgacttgctg
ggtgaaattaagcttcgtgtcgcggtcggcgaacgggtgctggccaccacgctcaccaaa
cgcatgtctgaagatctgaccgattacttaagcgaacatggcgtcaaagtgcgctatttg
cacagtgatattgataccgtagagcgggttgagattattcgtgacttgcgactcggtgaa
tttgatgtgctgattggcattaacttgttgcgcgaggggctggatatccctgaagtctct
ttggtggctgtgctcgacgccgacaaagagggttttttgcggtctgagcgctcgttgatt
caaacggctggccgtgctgcccgaaatttgaacggtaaggtcattttttacggcaatcgc
atcacgcgcagcatgaaattagccatggacgaagcggatcgtcggcgtaaaattcagtta
gcatttaacgctgaacatggcattgtgcccaaaggtgtgaccaagcgcatcaaagatatt
attgatggcgtctatgataaagatgaagcgcaacgtgagcgtaaggccgcacaagagcag
gccaactacgaaaacatgagcgagaaaaatttgaccaaagagctcaagcggatcgagaag
gccatgcacgacgcagccaaaaacctggagttcgaaaaagctgcgcaattccgcgaccaa
ttaaaaaaaataaagttacaggcatttggtgccgaagtagaagatttgaaatga
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