Methylophilus medardicus: FIU01_05800
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Entry
FIU01_05800 CDS
T10472
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mmec Methylophilus medardicus
Pathway
mmec03030
DNA replication
mmec03430
Mismatch repair
mmec03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmec00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
FIU01_05800 (dnaE)
03430 Mismatch repair
FIU01_05800 (dnaE)
03440 Homologous recombination
FIU01_05800 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmec03032
]
FIU01_05800 (dnaE)
03400 DNA repair and recombination proteins [BR:
mmec03400
]
FIU01_05800 (dnaE)
Enzymes [BR:
mmec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
FIU01_05800 (dnaE)
DNA replication proteins [BR:
mmec03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
FIU01_05800 (dnaE)
DNA repair and recombination proteins [BR:
mmec03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
FIU01_05800 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
DNA_pol_IIIA_C
tRNA_anti-codon
Motif
Other DBs
NCBI-ProteinID:
QDC44085
UniProt:
A0A5B8CT62
LinkDB
All DBs
Position
1169391..1172870
Genome browser
AA seq
1159 aa
AA seq
DB search
MEAPEIPPIQPAFIHLRCHSEYSIVDGTVRIDDYVKAAKNDAMPAIALTDLANLFGAIKF
YKAARGKGLKPLLGCDVWIENTVQRDQPHRVLLLVQNQQGYTHLCELLSSAYLENQYRER
AEVKAEWLQAKNAGLLMLSGFAAGDVGQCLQAGNQAQALQYAQQWAQLFAGRYYLEVQRV
HAPGSSDAYAQEQLIQQTVLIAQTLDLPVVATHPVQFQTADDYMAHEARTCIAEGYVLSD
KRRPRRFVATQYIKSQAEMQTLFADMPLALQNSVEIAKRCNLTLTLGKNYLPDFPTPNGE
SLDQYLIDQSKAGLAHRLAYLYPDEQQREAKREEYEARLQFECGIIVQMGFPGYFLIVAD
FINWAKNNGVPVGPGRGSGAGSLVAYSLGITDLDPLKYNLLFERFLNPERVSMPDFDIDF
CQEGRDRVIDYVKHKYGLASVSQIATFGTMAAKAVIRDVGRVLDLPFNFVDGIAKLIPLE
LGITLESALEKEPQLQERREKEEEVSELLSLALRLEGLVRNVGMHAGGVLIAPGKISDFS
PVYCQPNGDSLVSQYDKDDVEAVGLVKFDFLGLRTLTILNMALENANMQRAQEQLPPLSF
ETIPLDDKRSYHLLKTANTTAVFQLESRGMKDMLKQAKPDLFEDIIALVALYRPGPMDLI
PDFCRRKHGTQRVEYPHASTESILKETYGIAVYQEQVMQIAQVVAGYSLGGADLLRRAMG
KKKPEEMVQQREIFNEGALKNGLTLQQSNDLFDLLEKFAGYGFNKSHAAAYALVAYHTAF
LKAHYPAAFLAATMSADMNNTDNVHTFFDDCAANQIEVLPPDINASIYQFKPLNAQQVLY
GLGAIKGTGLAAIELISASRQAQGPFKDIFDFCQRLDLRKVNRRVIESLIRAGAFDKLEP
NRAALLAGLDTAISVAEQSAAHAGQDCLFGGVVETRHALPDIAPWSPEQALLEEKVALGF
YLSGHPYLSYKPQLSAFIKGNLGELAPQDQPRLLAGVVMGVRVRMTQRGKMAIVTLDDAV
GRTEVVVGSELLMQHAQWIKEDQLLVVEGRISHDEFSGGIRVSARKLYDLAAVRNRFAQM
LTLSCNGSSDVQRLMNVLTPYRYAGEEQKRCPIKVDYHNQSAQVSLMLGDDWQVVLHDDL
LQNLQGWLSKENVKILYNA
NT seq
3480 nt
NT seq
+upstream
nt +downstream
nt
atggaagcacccgaaattccccccattcaacccgcatttattcatttgcgctgtcacagt
gagtactccattgtggatggcactgtgcgtattgacgattatgtcaaagctgccaaaaac
gatgcgatgccagcgatcgcgctgactgacctcgccaacttgtttggtgcgatcaagttt
tataaagcggcgcgcggcaaaggcttaaaacctttgctgggttgcgatgtgtggattgaa
aataccgttcaacgcgatcagccccatcgcgttttgttgctggtacaaaatcagcaaggc
tatacgcatttatgtgaattactgtctagcgcttatcttgaaaatcaatatcgggagcga
gcagaagtcaaagcggagtggttgcaagccaaaaatgctggtttgttaatgctatccggt
tttgctgcaggggatgtcggccaatgtttgcaagcgggcaatcaggcgcaagctttgcag
tatgcgcagcaatgggcgcagttgtttgccggtcgctattaccttgaagtgcagcgtgtg
catgcgcccggcagtagtgacgcctatgcgcaggagcagctcattcagcaaacggtgctc
atcgcacaaaccctagatctgccagtggtagccacccatcccgtgcagtttcaaactgcg
gatgactacatggcccacgaggcgcgcacatgtattgccgagggttatgtgttgtcggat
aagcgtcgtccacgtcgttttgtcgccacacaatatatcaagagccaggccgagatgcag
actttgtttgccgacatgcctttagcattgcagaactcggtagaaattgccaagcgttgc
aacctcacgctgacgctcggcaaaaactacttgccggattttccaacgccgaatggtgaa
agcctggatcaatatctgattgaccagtcaaaagctgggctggcgcatcgtctggcttat
ttatatcccgatgaacagcagcgcgaagcgaagcgtgaagaatatgaagcgcgtttgcag
tttgagtgcggcatcatcgttcagatgggctttcctgggtattttttgatcgttgccgac
tttatcaactgggcaaaaaacaacggggtgccggttggcccgggccggggctccggtgca
ggttcgctggtcgcttacagcttgggcattactgatctggacccgttgaaatacaacctg
ttgtttgagcggtttttgaatcctgagcgggtatccatgcccgactttgatattgacttt
tgccaggaagggcgcgatcgcgtcatcgattacgttaagcacaaatatggcttggcatcg
gtctctcagattgccaccttcgggacgatggcggccaaagcggtgatccgcgatgttggc
cgcgtgctggatttaccttttaatttcgtcgatggcattgcaaagcttattccattggag
ttggggattacgcttgagtctgcacttgaaaaagagccacagctacaagagcgtcgcgaa
aaagaagaagaagtctcagaattactctcattggcgctaaggctagaaggcttggtgcgt
aacgtcggtatgcatgccggtggcgtgttgatcgcgccaggcaaaatctctgacttttca
ccggtctattgccaaccgaatggcgatagtttggtcagtcaatatgataaagacgatgta
gaagccgttggcctggtcaaattcgactttttgggcttgcggacgctgaccattctcaat
atggcactcgaaaatgccaatatgcagcgcgcacaagagcaattgccgccactcagtttt
gagacgattccgctcgatgataagcgcagctaccacttgctgaaaacggccaataccaca
gcggtgtttcagctcgaatcgcggggcatgaaagacatgctcaagcaggccaagcctgac
ttgtttgaggatattattgcgctggttgcgctctaccgaccaggtccgatggacctgatt
cctgacttctgccgtcgtaaacatggtacgcaacgcgtggagtacccgcatgcatccaca
gaatcgattctgaaagagacgtacggcattgcggtataccaagagcaggtcatgcaaatt
gcgcaggtggtggccggctacagtctaggtggcgccgatctgttgcggcgtgccatgggt
aagaaaaagcccgaagagatggtgcagcagcgcgaaatctttaatgaaggcgcgctgaaa
aatggtctgacgctacaacagtcaaatgatttgtttgacttactcgaaaaatttgccggt
tatggctttaacaagtctcacgcagcggcttatgccttggtggcgtatcacacggccttc
ctcaaggcgcattaccctgcggctttcttggcggccaccatgtctgcggacatgaataac
accgataacgtgcatacattttttgatgattgtgcggccaaccagattgaagtattgcca
cctgatatcaacgccagtatttaccaatttaaacccctcaacgcgcagcaggtgctgtat
ggcctaggcgcgattaaaggcactggcttggcggcgattgagttgatttctgcctcgcga
caagcgcaagggcctttcaaggacattttcgatttctgccagcgtctcgatttgcgcaaa
gtaaaccgtcgggtcatcgagtcgctgattcgtgcgggtgcgtttgataagttggaaccc
aatcgggcagcgttgttggctgggttagataccgccattagtgtggccgagcaaagtgcc
gcccatgctgggcaagattgtctgtttggtggggtggtcgaaacacgtcatgcgctacct
gacatcgcgccgtggagcccagagcaggctttactcgaagagaaagtcgccttgggtttt
tatctgagtgggcatccttatttgagttacaaaccgcaactgagcgctttcattaaaggc
aacttaggcgagctggcaccgcaagatcagcccaggttgttggctggcgtggtcatgggt
gtccgtgtacggatgacgcaacgcggcaaaatggcgattgtgacgcttgatgatgccgtc
ggtcgtaccgaagtggtggtgggctcagagttactgatgcaacatgcgcagtggattaaa
gaggatcaactgctggttgttgaggggcgcatcagtcatgatgaattttcgggtggcatc
cgtgtcagcgccagaaaactctatgacctggcggctgttcgtaaccgttttgcgcaaatg
ctgaccttgagctgcaatggttcgtcggatgtgcagcgtttgatgaatgtactcacgccc
tatcgctatgcgggggaagagcagaagcgttgtccgatcaaagtggactatcataatcaa
tcggcacaagtgagcttgatgttaggcgatgactggcaagtggtgctgcatgatgacctg
ttgcagaatttacagggctggttatctaaagaaaacgtcaaaatcctttataatgcctga
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