Methylophilus medardicus: FIU01_10080
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Entry
FIU01_10080 CDS
T10472
Symbol
pcnB
Name
(GenBank) polynucleotide adenylyltransferase PcnB
KO
K00970
poly(A) polymerase [EC:
2.7.7.19
]
Organism
mmec Methylophilus medardicus
Pathway
mmec03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmec00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
FIU01_10080 (pcnB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmec03019
]
FIU01_10080 (pcnB)
Enzymes [BR:
mmec01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.19 polynucleotide adenylyltransferase
FIU01_10080 (pcnB)
Messenger RNA biogenesis [BR:
mmec03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
FIU01_10080 (pcnB)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PolyA_pol_arg_C
PolyA_pol
PolyA_pol_RNAbd
Motif
Other DBs
NCBI-ProteinID:
QDC44831
UniProt:
A0A5B8CU59
LinkDB
All DBs
Position
complement(2131608..2132954)
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AA seq
448 aa
AA seq
DB search
MIKQFLQKVFRRRVNVNTHTQLPAAQIIQAGKHKINQKHISQAALKTCDQLQKAGFQAYI
VGGAVRDLLLNHPPKDFDVATNATPEQVHKVFRRSRIIGRRFRLVHVLWGHETIEVSTFR
GHHLSEGDAETNDSGRIIRDNVFGSIEEDSVRRDFTANALYYDPKRQEVLDFHHGVADIR
AKTLRMIGDPLKRYQEDPVRMLRAVRLSAKLGLKLERETEAPIRKLANLLEDVPPSRLFD
EMLKLFLSGHAIESINALRAQQLHHGLLPLLDVVLEQPMGEKFVMLALKNTDERIQAGKS
SNPSFLFATLLWHEVLLAWQENQKRGEHMIPALHEAMNEVIDKQAEKMAIHNRYTATMKE
IWVMQPRFEQRSGKRPYALLTNPKYRAGYDFLLLRCASGELPQALGDWWTRFADAGTDER
TAMLLPESGPKKRRRKPRKKTSVGGEAV
NT seq
1347 nt
NT seq
+upstream
nt +downstream
nt
atgattaaacaattcttacaaaaagtattccgtcgtcgtgtcaatgtgaatacccatacc
caattgcctgcggcacaaatcattcaggcgggcaaacataaaatcaaccagaagcacatc
agtcaagcggcattaaaaacctgtgaccagctacaaaaagctgggtttcaggcctatatc
gtggggggcgccgtacgcgatttattgctgaatcatccgcccaaggattttgacgtcgcc
accaatgccacgccagagcaagtacataaagtgtttagacggtcgcgtattattggccgt
cgctttcgattggtgcatgtgttgtgggggcatgagaccatcgaagtatcgacgttccgc
ggccatcatttgagtgaaggcgatgctgagaccaatgacagtggccgcatcatccgtgac
aatgtgtttggctcaatcgaggaggactccgtccggcgcgatttcaccgccaatgcgctc
tattacgaccccaaacgacaagaggtcttagactttcaccacggtgtagccgacattcgc
gctaaaaccttgcgcatgattggcgatccgctcaaacgttatcaagaagatccagttcgc
atgctgcgtgcggttcgattgtctgccaaattgggtttgaaactagagcgcgaaacggaa
gcgcccatccgcaaactggcaaacttgttagaggatgtcccgcccagccgtttgttcgac
gaaatgctcaaactctttttgtccggccatgcaatcgagagcatcaatgctttacgtgcg
caacagttgcaccatggtttgctgcccttgctagatgtagtgctcgagcagccaatgggc
gaaaaatttgtcatgttggcgctaaaaaataccgacgagcgcattcaggctggtaagtcg
tctaacccaagctttttgtttgctaccttgctgtggcatgaggtgctgttggcttggcaa
gaaaatcaaaaacgtggtgagcacatgatcccggcgctgcatgaagcgatgaatgaagtc
atcgacaagcaggccgaaaagatggcgatacataatcgctataccgcgaccatgaaagaa
atttgggtgatgcagccgcgctttgaacaacgctctggcaagcggccttatgccttgttg
accaatccaaaatatcgcgctggctatgactttttgctgctacgttgtgcctcaggcgaa
ttgccgcaggcgctgggtgactggtggacacggtttgccgatgcgggcacagacgagcgc
actgcgatgttgttgcctgaaagcggaccaaaaaaacgccgccgcaagccgcgcaaaaaa
acatcagtgggcggagaagctgtttaa
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