Methylophilus medardicus: FIU01_11130
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Entry
FIU01_11130 CDS
T10472
Symbol
xerD
Name
(GenBank) site-specific tyrosine recombinase XerD
KO
K04763
integrase/recombinase XerD
Organism
mmec Methylophilus medardicus
Brite
KEGG Orthology (KO) [BR:
mmec00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mmec03036
]
FIU01_11130 (xerD)
Chromosome and associated proteins [BR:
mmec03036
]
Prokaryotic type
Chromosome partitioning proteins
Other chromosome partitioning proteins
FIU01_11130 (xerD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Phage_integrase
Phage_int_SAM_1
Phage_int_SAM_4
Phage_int_SAM_5
DUF3435
Motif
Other DBs
NCBI-ProteinID:
QDC45015
UniProt:
A0A5B8CVT1
LinkDB
All DBs
Position
complement(2343809..2344738)
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AA seq
309 aa
AA seq
DB search
MRQQKPLVKQAAGTSHGAPEIDTFIDQLWLEDGLSPNTLSSYRNDLKGFAGWCGEQSLTL
RQIQAHHVQAYLAYRFPLVKVRSINRLIATLRRFYRYALLERLIQQDPTLHIEAPKMPKS
LPKTLSEAQVEDLLHAPDVNAALGLRDRAMLELLYASGLRVSELVNIRIAEVSTQDGVVR
VTGKGSKTRLVPMGQEAAEWIDRYLTVARPDILKGALSDAVFVTTRGAAMTRHAFWHLIQ
RYALQAGISQHISPHVLRHAFATHLLNHGADLRVVQMLLGHADISTTQIYTHVARERLQQ
LHKVHHPRG
NT seq
930 nt
NT seq
+upstream
nt +downstream
nt
atgcggcaacagaaaccgcttgtgaagcaagcagcagggacgagtcatggggcgcccgag
attgatacatttattgaccagctttggctcgaagatggtttgtcgccgaataccctgtct
agttaccgcaatgatttaaagggctttgctgggtggtgtggcgagcagtcgctgacgctc
aggcaaatacaagcgcatcacgtgcaggcctacttggcctatcgttttccgttggtcaaa
gtgcgaagcattaaccgtttgattgcgactttgcgtcgcttttatcgctatgcgttgtta
gagcggctgatccagcaggatccgaccttgcatattgaggcgccaaaaatgcctaaatcc
ttgcccaaaacgctgagcgaggcgcaagtggaagacttgctgcatgcgccggatgtcaat
gcggcattgggtttgcgtgaccgcgccatgttggaattgctgtatgcgagtggtctgcga
gtgtctgagctagtgaatattcgtatcgccgaagtcagcacgcaagacggtgttgtgcgg
gtgactggcaaaggcagtaaaacgcgactggtcccgatgggacaagaagccgcggagtgg
atagaccgttatctgacggttgcgcgccctgacattttaaaaggcgcgttgagtgatgcc
gtatttgtcaccacgcgaggggcggcgatgacacggcacgctttctggcaccttattcaa
cgctatgccttgcaagcgggtatctcgcaacatatcagcccgcatgttttacgccatgct
ttcgctacccatttgttaaaccacggtgcggacctgcgcgtggtgcagatgctgctcgga
catgcagacatctcgactacacaaatttatacgcatgtggccagagagcgtttgcaacag
ttacataaagtgcatcatcccagaggttga
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