Martelella mediterranea: Mame_01107
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Entry
Mame_01107 CDS
T04757
Symbol
rhlE_1
Name
(GenBank) ATP-dependent RNA helicase RhlE
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mmed
Martelella mediterranea
Pathway
mmed03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmed00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Mame_01107 (rhlE_1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmed03019
]
Mame_01107 (rhlE_1)
Enzymes [BR:
mmed01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Mame_01107 (rhlE_1)
Messenger RNA biogenesis [BR:
mmed03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Mame_01107 (rhlE_1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
HEM4
NAT10_TcmA_helicase
AAA_19
Utp25_C
CMS1
ERCC3_RAD25_C
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
AQZ50478
UniProt:
A0A1U9YYH7
LinkDB
All DBs
Position
complement(1202218..1203576)
Genome browser
AA seq
452 aa
AA seq
DB search
MTEFNTLGLSAQLVARVAAEGYETPTPIQAKAIPLVLEGRDVMGLAQTGTGKTAAFGLPI
IDMLLANGGKPASKTVKTLILAPTRELVNQIAENLRIFARKTPLKVNIVVGGASINRQQQ
QLAGGTDILVATPGRLLDLLDRRALNLSAVRYLVLDEADQMLDLGFIHDLKKISSLVPDE
RQTMLFSATMPKSIAELSKRFLTNPERVEVTPPGKTADRVEQAVHFVAGKNDKVELLRQE
LTNNPDGRAIVFLRTKHGAEKLMKHLDSRGFATASIHGNKSQGQRERALKAFKTGEINVL
VATDVAARGIDVPGVTHVYNYDLPEVADAYVHRIGRTARAGKEGKAIAFCTPEESALLRD
IQKLTGIEITVASGEPHAMAERPARGNGRGRGGAGNGKPARRARPSANGGQRQGEARNGG
PRDGAPREGANRNRPAKNRRPRNRQGDRRQSA
NT seq
1359 nt
NT seq
+upstream
nt +downstream
nt
ttgactgaatttaatacacttggactttccgcccagctcgtcgcccgtgttgccgcggag
ggttatgaaaccccgacgccgatccaggcgaaggcgataccgctggtgctcgaaggccgc
gacgtgatgggccttgcccagacaggcaccggcaagacggccgctttcggcctgccgatc
atcgacatgctgctcgccaacggcggcaagcccgcgtcgaagaccgtcaagacgctgatc
ctcgccccgacgcgcgaactggtgaaccagatcgcggaaaacctgcgcatcttcgcccgc
aagacgccgctcaaggtcaacatcgtggtcggcggcgcatcgatcaaccgccagcagcag
cagcttgcaggcggcaccgacattcttgtggccacccccggccggctgctcgacctactc
gaccgcagggcgctcaacctttccgccgtgcgctacctggtgctggacgaggccgaccag
atgctcgacctcggcttcatccacgacctgaagaagatttcgtcgctggtgccggacgag
cgccagaccatgctgttttcggccaccatgccgaaatcgattgccgagctttctaagcgc
ttcctgaccaatccggaacgcgttgaagtgacgcctcccggcaagaccgccgaccgtgtc
gagcaggccgtgcacttcgtcgccggcaagaacgacaaggtcgagcttctccgccaggaa
ctcaccaacaatccggatggccgcgcgatcgtgttcctgcgcaccaagcacggcgccgag
aagctgatgaagcatctcgacagccgcggcttcgccaccgcctcgatccacggcaacaag
agccagggacagcgtgagcgcgcgctcaaggcgttcaagaccggtgaaatcaacgttctg
gtcgcaaccgacgtcgccgcccgcggcatcgatgtgcccggcgtcacccatgtctacaac
tacgatctgccggaagtggccgacgcctatgtccaccgtatcggccgcaccgcgcgcgcc
ggcaaggaaggcaaggcgatcgcgttctgcacgcccgaggaatcggcgctgctgcgcgat
atccagaagctgaccggcatcgagatcaccgtggcgagcggcgaaccccatgcgatggcc
gagcgcccggcgcgcggcaatggccgtggtcgcggcggcgccggaaacggaaaacccgcc
cgccgggcccgtccttccgccaatggcggccagcgccagggcgaagcccgcaatggtggc
cctcgtgacggcgcgccccgcgagggcgccaaccgcaaccgcccggccaagaaccgccgc
ccgcgcaaccgccagggcgaccgtcgccagagcgcgtga
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