Marinobacter metalliresistant: NLK58_04865
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Entry
NLK58_04865 CDS
T10462
Symbol
rne
Name
(GenBank) ribonuclease E
KO
K08300
ribonuclease E [EC:
3.1.26.12
]
Organism
mmee Marinobacter metalliresistant
Pathway
mmee03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmee00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
NLK58_04865 (rne)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmee03019
]
NLK58_04865 (rne)
03009 Ribosome biogenesis [BR:
mmee03009
]
NLK58_04865 (rne)
Enzymes [BR:
mmee01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.26 Endoribonucleases producing 5'-phosphomonoesters
3.1.26.12 ribonuclease E
NLK58_04865 (rne)
Messenger RNA biogenesis [BR:
mmee03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
NLK58_04865 (rne)
Ribosome biogenesis [BR:
mmee03009
]
Prokaryotic type
rRNA processing factors
NLK58_04865 (rne)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_E_G
RNase_E_G_Thio
S1
Motif
Other DBs
NCBI-ProteinID:
WZF89539
UniProt:
A0ABZ2W446
LinkDB
All DBs
Position
1059192..1062287
Genome browser
AA seq
1031 aa
AA seq
DB search
MKRMLINATHPEELRVALVDGQRLFDLDIESSSREQKKANVYKGRITRVEPSLEAAFVDF
GADRHGFLPLKEISKEYFKKSPGQIEGKINIKDVVSEGQEVIVQVDKEERGNKGAALTTF
ISLAGRYLVLMPNNPRAGGISRRIEGDERAQLKDAMNNVQIPKSMGIIVRTAGIGRTTEE
LQWDLDYLVQFWEAISQAAGERKAPFLIHQESNVIIRAVRDYLRQDIGEVLIDSDGVHED
VLNFVRAVMPTFENKIKLYKDEIPLFSRYQIEGQIETAFQREVKLPSGGSIVIDPTEALV
SIDINSSRATKGHDIEETALQTNLEAAEEIARQLRLRDMGGLIVIDFIDMTPAKHQREVE
QKMREALEIDRARVQVGKISRFGLLEMSRQRLRPSLGETRSEVCPRCEGQGTIRGIESLA
LSIMRLIYEESSKDKTGEVRAVVPVSVATFLLNEKRKQLADIEARQEVSVVVVPVPHMET
PHFEIVRMRDDETTPEHISSHQVAQEYSEREEEIFEAPAAEKPVREQAAVRAVRPSAPAP
TPAPKAAEAVDQEEGLFRRLGRKIACFFSGEEEQQTETSEKSRSQREEHRNQGRQDRRKS
RVARGDDQRSGGNRSGNERRQGGPQGRGEDNRGRNRNRNDDPNRGNQNRQSPETKDSDTK
GDNKSDGKGTDNRRDNRRDSQGRGRNKPQRDPKDSRDQKDNGPQESAAKPAGGEKTASDE
KRRKPRRQRNRDGSPAENPASTPADRKAVRSEKHQKDTQPEVSSEGDKPAVKAGQPRDSR
EKASEKPENKAATPIQKDAPKQDPKQGQADQPAASEASSDSQAPEQPKEAPKAADQPTGK
TGDAAESGKSAEPPQKAEDKSAKPSAADRKPSAAGKKRSAADKKPSAPENEPAAESADQA
PKVEAEKKAEAEPKQPAKAEKAPETASGQPAGSSEAPAPAEKPQAAEEPAPQSTAPKKAA
PKEQPEPKPSLAADAQPEKTEKPAAEAAKTDESPETPAANIPVTPGRAYNDPREVRKRQK
AAEEAKKAGSN
NT seq
3096 nt
NT seq
+upstream
nt +downstream
nt
atgaaaagaatgcttatcaatgcaactcaccctgaagagttgcgcgtagctctggttgac
ggccagcgtctgtttgatctcgacatcgaatccagctcccgcgagcagaagaaagccaac
gtatataagggtcgcattacccgcgttgagcccagtctcgaagctgcgttcgttgatttc
ggtgccgatcgccacggctttctgcccctgaaggaaatctccaaggagtacttcaagaaa
tccccgggtcagattgagggcaagatcaacatcaaggatgtggtctctgaaggccaggaa
gtcatcgtccaggtggacaaggaagaacgtggtaacaagggcgctgccctgacgaccttt
atttccctggccggccgctatctggtactcatgcccaacaaccctcgtgccggtggtatt
tcccgccgcattgagggcgacgagcgggcccagctcaaagatgccatgaacaatgtccag
ataccgaaatccatgggcatcattgttcgtaccgctggcattggccggaccaccgaagaa
ctgcagtgggatctggattacctggttcagttctgggaagccatctcccaggccgccggc
gaacgcaaggcgccgttcctgattcaccaggaaagcaacgttattatccgtgccgtacgt
gactaccttcgccaggatattggcgaggttctgatcgattccgatggcgtacatgaggac
gtactgaattttgtccgcgcggtaatgccaacgttcgagaacaagataaagctttacaag
gacgaaatccccctgttcagccgttatcagatcgaaggccagatcgagaccgcgttccag
cgggaagtgaagttgccttccggcggttcaattgttatcgatccaaccgaagcactggtt
tccatcgacatcaactcctcccgtgccaccaagggccacgacatcgaggaaaccgccctc
cagaccaacctggaagcggccgaggaaatcgcccgccagctgcgcctgcgtgacatgggc
ggcctgattgtcatcgatttcatcgatatgaccccagccaagcaccagcgggaagttgaa
cagaagatgcgtgaggccctggaaattgaccgggcccgggttcaggttggcaagatctcg
cgatttggcctgcttgagatgtcccgtcagcgtctgcgcccctccctcggggaaacacgc
agtgaggtttgtcctcgttgcgaaggccagggcaccatccgaggcattgaatccctcgcc
ctgagcatcatgcgcctgatctacgaagagtcctcgaaagacaagaccggcgaagtgcgg
gctgtcgttcccgtgtccgttgccactttccttttgaacgaaaagcgcaagcagctggca
gatatcgaggcgcgccaggaagtgagcgtcgtcgtggttcccgtgccacatatggaaaca
ccgcacttcgaaatcgtccggatgcgcgacgatgaaacaacgcccgagcatatctccagc
caccaggtggcccaggaatacagcgagcgtgaagaggaaatcttcgaagctccggccgcg
gaaaaaccggttcgtgaacaggcagccgtacgggcggttcgccccagtgcacccgcgccc
actccggcaccaaaggctgccgaagccgtcgatcaggaagaaggcctgttccgccgcctt
ggccgcaagattgcctgcttcttcagcggagaagaagaacagcagaccgagaccagcgaa
aagagcagaagccagcgtgaggaacaccgcaatcagggccgccaggatcgtcgcaaatcc
cgcgtagcccgtggtgacgaccagcgttccggcggcaaccgcagcggcaacgaacgtcgt
cagggcggcccgcaaggccgtggcgaggataaccgcggtcgcaaccgcaatcgcaacgat
gacccgaaccgcggaaaccagaatcgccagagccccgagaccaaggacagcgacaccaaa
ggcgacaacaaaagcgacggcaagggcactgacaaccgccgggataaccgccgggacagc
cagggccgtgggcgcaacaagcctcagcgagacccgaaagatagtcgggaccagaaggac
aacggcccacaggaaagcgctgccaagccagccggtggcgaaaaaaccgcatctgacgaa
aagcgtcgcaagccccgccgtcagcgtaatcgcgatggctctccggcggaaaacccggcc
tccacaccagcggatcgcaaggctgtccgaagcgaaaagcaccaaaaggatacccagccg
gaggttagttccgaaggcgacaagcctgcggtgaaagccgggcagccacgggatagccgt
gaaaaggcttctgaaaaacctgaaaacaaggcagccacgccgattcagaaggacgcgccg
aagcaagatccgaaacagggccaggccgaccagcctgctgcttcagaagcgtcttctgac
agccaggctccagagcagccgaaagaagcaccgaaagccgctgaccagccgaccgggaag
accggcgacgctgctgagtccggcaaaagcgcggagccccctcaaaaggcagaagacaag
agcgccaagccttcagctgcggatcgaaagccatcagcggctgggaaaaagcgctccgcg
gccgataaaaagccctctgctccggagaacgaacccgcagccgaaagcgctgatcaggca
ccgaaagtcgaagcggaaaagaaggcagaagctgaaccaaagcaaccggccaaggccgaa
aaagcgcctgagaccgcttccgggcaaccggccggcagctctgaagcgccggcccctgcc
gaaaagccgcaagcggctgaagagccggcaccgcagtccaccgctccgaaaaaggcggcg
ccgaaagagcagcccgaaccgaagccgtctctggccgcagatgcgcagcctgaaaagact
gagaagcctgcggctgaggccgcgaaaacggacgaatctcccgaaacaccggcagccaat
attcctgttacaccaggacgtgcctacaatgacccccgagaggtccgcaagcgccagaag
gctgcggaagaggccaaaaaggccgggagtaactaa
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