Marinicellulosiphila megalodicopiae: TYM08_P1278
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Entry
TYM08_P1278 CDS
T10978
Name
(GenBank) DNA helicase II / ATP-dependent DNA helicase PcrA
KO
K03657
ATP-dependent DNA helicase UvrD/PcrA [EC:
5.6.2.4
]
Organism
mmeg Marinicellulosiphila megalodicopiae
Pathway
mmeg03420
Nucleotide excision repair
mmeg03430
Mismatch repair
Brite
KEGG Orthology (KO) [BR:
mmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TYM08_P1278
03430 Mismatch repair
TYM08_P1278
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmeg03400
]
TYM08_P1278
Enzymes [BR:
mmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TYM08_P1278
DNA repair and recombination proteins [BR:
mmeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TYM08_P1278
MMR (mismatch excision repair)
Other MMR factors
TYM08_P1278
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UvrD-helicase
UvrD_C
AAA_19
UvrD_C_2
AAA_30
Viral_helicase1
AAA_11
PcrA_UvrD_tudor
ResIII
AAA_12
NPHP3_N
Motif
Other DBs
NCBI-ProteinID:
BCE01215
LinkDB
All DBs
Position
complement(1564303..1566441)
Genome browser
AA seq
712 aa
AA seq
DB search
MDISRLIDPLNEPQRQAVCTDSQHTLVLAGAGSGKTRVLTHRIAYLVETGQASSFGVLAV
TFTNKAAKEMRSRIESLMMQPPKGMWVGTFHSLAHRLLKTHYVEAKLPEQFQVLDSDDQL
RLVKRIVKDLNLDDTKWQPKSAQWFINGQKDEGKRFKHIPPSSDFHEQGMLKIYEQYELI
CQQTGVVDFAELLLRAHELWLNNPEVLKHYQERFRHVLVDEYQDINSIQYAWLRVLCGEN
ANLMVVGDDDQSIYGWRGAKVENILRFSEDFPKVETVKLEQNYRSSGHILKAANAVIDNN
SGRLGKELWTDDEDGETIRLYAAYNEHDEARFIADDIDGQSDEFNEMAILYRSNAQSRVI
EEHLIRMSIPYRIFGGHRFYDRLEIKNAMCYLRMMLNRHDDTAMERIINLPVRGIGNKSI
DTMRIFARDQGISFWQAASQIVEHKILPNRACSAIEGFLTLINDIDSQSDEMNLAEITDF
IIKQSNLIAHHQKEKGEKGRTRVENLKELVSAAASFINESDNSDLSEFVSQASLDAGDNQ
ADTHEQAVSLMTLHSAKGLEFDRVYLAGLEEQLFPHKMSMDDPDGLQEERRLCYVGITRA
RKHLCISYAESRRLYGNEQFNASSRFIREIPNEHLQEIRLNSQVSRPVMFTETPKEIMSD
SGFQLGQDVNHPVFGRGVILSCEGIGTNARVEVQFIESTKWLMLQFAKLEAV
NT seq
2139 nt
NT seq
+upstream
nt +downstream
nt
atggatatttctcgccttattgacccactgaacgaacctcaacgccaagcggtttgtacc
gacagtcaacacactttagtgcttgcaggtgccggtagcgggaaaactcgagtattaacg
catcgcattgcttatttagttgagaccggtcaagccagctcttttggcgtgttagccgtt
acctttactaataaagctgccaaggaaatgcgctctcgaattgaatcattaatgatgcaa
ccaccaaagggcatgtgggtcggcacatttcacagccttgctcatcgattattaaaaacc
cattacgttgaagccaaattacctgagcaattccaggtattagacagcgatgatcaattg
cgtcttgtaaagcgaatcgtaaaagacttaaatttagacgacacaaaatggcaacctaaa
tccgctcaatggttcattaacggccaaaaggatgaaggcaaacgattcaaacatattcca
ccttcttctgattttcatgaacaaggcatgctcaaaatttacgaacaatatgaattaatc
tgccagcaaactggcgtggtggattttgcagaattattacttcgcgcccatgaattatgg
ttaaacaatccagaggtactcaaacattaccaagaacgctttcgtcatgtattggtggac
gagtatcaggatatcaacagcattcaatacgcttggcttcgagtgctttgtggagaaaac
gcaaatttaatggtagtgggtgatgacgaccaatccatttacggatggcgcggtgcaaaa
gttgagaacattttacgtttcagcgaagattttccaaaagtagaaaccgttaaacttgaa
caaaactatcgctcaagcggacatatcttgaaagcagccaatgccgtgatcgataataac
tctggtcgtttaggtaaagaattatggaccgatgatgaagatggcgaaaccattcgttta
tatgccgcttataacgaacatgatgaagcgcgttttatagccgatgacattgacgggcaa
agcgatgagtttaatgaaatggcaattttgtatcgctcaaacgcacaatcacgtgtaatt
gaagagcatttaattcgcatgtcgattccttatcgcatttttggtgggcatcgattctac
gaccgcttagaaattaaaaatgcaatgtgttatttacgcatgatgttaaatcgtcatgac
gacaccgccatggaacgcattattaatttgcctgttcgaggcattggtaataagtccatt
gatacaatgcgaatatttgcacgtgaccaaggcatatcattttggcaagcagcatcacaa
attgttgaacataaaattttacccaatcgcgcttgctcggcaattgaagggtttttaaca
ttaattaatgacatcgacagccaaagcgatgaaatgaatttggcagaaatcaccgatttt
atcatcaaacaatccaacctaattgcgcatcaccaaaaagaaaaaggcgaaaaaggccgc
actcgcgtagaaaacttaaaagagcttgtatcggctgctgccagttttataaatgaaagc
gacaatagtgatttatccgaatttgtttctcaggcatcacttgatgcaggagacaatcaa
gcagacactcacgaacaagcagtgagtttaatgacattgcacagcgccaaagggttagaa
tttgaccgagtctatttagcaggactagaagaacaattatttcctcataaaatgtcgatg
gatgaccccgacggtttacaagaagagcgccgtctttgttatgttggcatcactcgcgcc
cgcaaacatttgtgcatttcttatgcagagagtcgtcgcttatatggtaacgagcaattc
aatgcttcatcgcgttttattagagaaattccaaatgaacatttacaagagattcgatta
aattctcaagtgtcgcgccctgttatgtttacagaaacgccaaaagaaatcatgagtgac
tcgggctttcaattgggtcaagatgtgaaccatcctgtatttggcagaggcgttatttta
tcttgtgaaggtattggtactaatgcgcgagttgaagttcaatttatagaaagcaccaaa
tggctgatgctccaatttgctaagctcgaagctgtttaa
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