Marinicellulosiphila megalodicopiae: TYM08_P1289
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Entry
TYM08_P1289 CDS
T10978
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mmeg Marinicellulosiphila megalodicopiae
Brite
KEGG Orthology (KO) [BR:
mmeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmeg03032
]
TYM08_P1289
03400 DNA repair and recombination proteins [BR:
mmeg03400
]
TYM08_P1289
Enzymes [BR:
mmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TYM08_P1289
DNA replication proteins [BR:
mmeg03032
]
Prokaryotic type
DNA Topoisomerases
TYM08_P1289
DNA repair and recombination proteins [BR:
mmeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TYM08_P1289
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_Ribbon_Topo
Zn_ribbon_bTOP1
Toprim
Zn_ribbon_Top1
Zn_ribbon_recom
Motif
Other DBs
NCBI-ProteinID:
BCE01226
LinkDB
All DBs
Position
1578162..1580840
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AA seq
892 aa
AA seq
DB search
MGKSLVIVESPAKAKTINKYLGSNFVVKSSIGHIRDLPTSAKSEPVDPKERAKAAAITRK
LSPDQKVIHKAKKAKEQLINRMGVNPEKDWEAKYEILPGKEKVVAELKKLAENADFVYLA
TDLDREGEAIAWHLRESIAAAPEKYKRVVFNEITKKAITEAFEKPGELDMAMVNAQQARR
FLDRVVGFMVSPLLWAKVARGLSAGRVQSVAAKLVVEREREIRAFIPEEFWDCQVNTNYK
NKQLLLEVARQGDSAYKPTNKEQSDAAVAVLNASDFIIKAREDRPTSSKPSAPFITSTLQ
QAASTRLGFSVKKTMMMAQRLYEGGYITYMRTDSTNLSAEAVESARDYINGQYGEEYLPA
EPIRYGSKEGAQEAHEAIRPSNVELTKDDLVSQENDALRLYHLIWARFLACQMTPAKYLS
SNIIVQASEFECRLKGRILKFDGHTRVLPPGGKKEEDVILPDVNVSDKLELVEVLPKQHF
TKPVARFTEAALVKELEKRGIGRPSTYASIISTIQDRGYAKVESRRFFAEKMGDIVTSRL
DESFNELLNYNFTASMEERLDDVAKGQKNWKDVLNEFYLDFTKQLEKASGEEGGMRLNEP
TLTDIECPTCSRPMTIRTGTTGVFLGCSGYALPPKERCKSTINLVSGDEIVDLDAEDESA
ETKALMNKRRCDICGTAMESYLIDEKRKLHICGNNPDCEGFHVEAGEYKIKGYDGPSLDC
DKCGHEMQLKDGRFGKYFGCTAEECKNTRKLLRNGEAAPPKMDPVPMPELKCVKVDDTYI
LRDGAAGMFLAASQFPKNRETRPPLVKEILPHKDAIDPKYEFLFSAPVKDKAGNPTVIRY
SRKNKEQYVMTEVDGKATGWKATFESGKWIIDDKKVKVVKKDSKATKEKAKK
NT seq
2679 nt
NT seq
+upstream
nt +downstream
nt
atgggtaaatcattagttattgtcgagtcacctgcaaaagccaaaacgattaataaatat
cttggttcaaattttgtagttaaatcatcaattggtcacattcgagatttgccaacttct
gctaaatcagaaccagtggatccaaaagagcgcgcaaaagctgcagcgatcacacgtaaa
ctttcgcctgatcaaaaagttattcataaagcgaaaaaagcaaaagaacaattaatcaat
cgtatgggggtcaatcctgaaaaagactgggaagccaaatacgaaattttaccaggcaaa
gaaaaagtcgttgccgaattaaaaaaattagctgaaaacgctgattttgtctatctcgcg
accgatttggatagagagggggaggccattgcgtggcatttgcgcgaatctattgctgcc
gctcctgaaaaatacaagcgcgttgtgtttaatgaaattaccaaaaaagcaattacagaa
gcctttgaaaagccaggcgagttagatatggcaatggtgaatgctcaacaagcacgtcga
tttttagatcgggttgttggcttcatggtttcaccacttttatgggcaaaagtggctcgt
ggtttaagtgcgggtcgagttcaatcggttgcagctaaattagtggttgagcgtgaacgt
gaaattcgtgcattcattcccgaagagttctgggattgccaagttaataccaattacaaa
aataagcagttattgttagaagtagcacgacagggtgactctgcttataagccaaccaat
aaagaacaaagtgatgccgcagttgccgtattaaacgcaagtgactttattattaaagcg
cgtgaagatcgtccaacaagctcaaaaccttcagcaccttttattacttcaacgcttcaa
caggctgcaagtacgcgcttaggttttagtgtgaaaaaaaccatgatgatggcacaacgt
ttatatgaaggcggttatattacttatatgcgtactgactctacaaatttaagtgctgag
gcagttgaaagtgcgcgtgattatattaatgggcaatatggggaagaatatttgcccgca
gagccaattcgttatggtagtaaagaaggcgcgcaagaggcccatgaggcgattcgtcca
tcgaatgttgaattaaccaaagacgatttagtttctcaagaaaatgacgcacttcgtttg
tatcatttaatttgggcgcgttttttggcttgccaaatgacaccggcaaaatatttaagc
tcaaatattattgttcaagccagtgaatttgaatgtaggctaaaaggtcgtattttaaaa
tttgatggtcacactcgtgtattaccgccaggtggtaaaaaagaagaagatgtaatttta
ccagatgtgaatgtatcggataagttagagttagttgaagtattacccaaacaacatttt
acaaaaccagtcgcgcgttttacagaggctgcattagtaaaagaattagaaaaacgaggt
attggccgaccatctacttatgcatcgattatttctacgattcaagatcgtggttatgcc
aaagttgaaagtcgtcgtttctttgccgaaaaaatgggggatattgttacctctcgttta
gatgaaagcttcaacgaattattaaattacaattttacagcgtcaatggaagagcgttta
gatgacgtagctaaaggtcaaaaaaattggaaagatgtattaaatgaattctatttagac
tttaccaaacaacttgaaaaagcatctggtgaagaaggtggaatgcgtttgaatgaaccg
actttaactgatattgaatgtccaacttgttcgcgcccgatgacgattcgtacaggcaca
acaggggttttcttaggttgttcgggttatgcattgcctccaaaagaacgttgtaaatca
acgatcaacttagttagtggagatgaaattgttgatttagacgcagaagatgaatctgcc
gaaacaaaagcactaatgaataaacgtcgttgtgatatttgtggcacagcaatggaaagt
tacctaatcgatgaaaaacgcaaattacatatttgtggtaataatccagattgtgaaggg
tttcatgttgaagcgggtgagtacaaaattaaaggttatgatggtccttcattagactgc
gacaaatgcggtcatgaaatgcaattaaaagatggtcgttttggtaagtattttggttgt
acggcagaagagtgtaaaaacacccgtaaactgttgagaaacggagaagcagcgccacct
aaaatggacccagtgccaatgcctgagcttaaatgtgtgaaggtggatgacacatatatt
ttaagagatggtgccgctggaatgtttttagctgcaagccagtttcctaaaaatcgtgaa
acccgaccgcctttggtgaaagaaattttaccacacaaagatgccattgatcctaagtat
gaatttttattcagtgcacctgtgaaagacaaagcaggtaatccaacggtaattcgttat
agtcgtaaaaataaagaacaatacgttatgacagaagtggatggaaaagccacgggttgg
aaggcgacgtttgaaagtggtaaatggatcattgatgataaaaaagtcaaagttgtaaaa
aaagactcaaaggctactaaagaaaaagctaaaaaatag
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