Marinicellulosiphila megalodicopiae: TYM08_P1854
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Entry
TYM08_P1854 CDS
T10978
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmeg Marinicellulosiphila megalodicopiae
Pathway
mmeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TYM08_P1854
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmeg03400
]
TYM08_P1854
Enzymes [BR:
mmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TYM08_P1854
DNA repair and recombination proteins [BR:
mmeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
TYM08_P1854
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
Cas3-like_C_2
AAA_30
ERCC3_RAD25_C
UB2H
Mst1_SARAH
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
BCE01791
LinkDB
All DBs
Position
complement(2251546..2254998)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSFTLPKGSSDQRTLFNLSGSAQGYYIAQSCAQTKRPILVICDSIAQAQALEVQTQFYLD
KSITTKQFVDWETLPYDQFSPHQDIISERIELLASLSNQAQQIIFCSVNTLLTRLPPSSF
IAQHSFCLKLNQVLDVEHFRNNLVQAGYQNVEAVYEHGDFAVRGAIIDVFPMGSEFPVRI
ERFDDEIDTLRYFDPETQRSLEKISELVLLPGKEFSLTKESVNSFRSRFREQFAINTQDC
PLYQDIIQGVVPAGIEYYLPLFFDQTQHFFDYLNDDWLVICSENLERSMDKQLADIHHRY
ENQRHNIVHPILPPESLYFHKEEFFKSLKQFARLNLSTQLGEDKPAAGKYQANVDKSENF
YVDSTHERPLILFENHFLDDQKRMLICAESLGRREILLGLFKRQNLTIKQVNSFQEFLDS
TEPLCLTVAPLDEGLVLPELNIEVICEPQLFGQFIVQQRQRKRSAKSENPDLIVKNLTEL
NIGAPVVHLDHGVGRYLGLQSLEVDGQVQEFLQLEYASDAKLYVPVGLLHLISRYSASEE
ASAPLHRLGTEKWSTAKRKAVEKIRDTAAELLNIYAKREAKQGYAFKPCDADYREFAQGF
AFEETPDQEAAINAVIQDMCRTRPMDRLVCGDVGFGKTEVAIRAAFLAAQSGKQVAILVP
TTLLAQQHFENFSDRFANWPINIGLLSRFTASKVTKQTLLGLESGTIDIVIGTHKLLSAD
VKFKDLGLLVIDEEHRFGVQQKEKVKALRADIDILTLTATPIPRTLNMSMSAIRDLSIIA
TPPARRLSVKTFVREYDDDIIKESILREILRGGQIYFLHNSVKDIEKTKNKLQELIPEAR
IGIGHGQMNERELERVMQDFYHRRFNVLLCTTIIETGIDIPSANTIIIERADKFGLAQLH
QLRGRVGRSHHQAYCYMLTPPAANLTKDAIKRLEAIEGAQDLGAGFTLATHDLEIRGAGE
LLGEDQTGHIEGIGFSLYMDMLEKAVNAIKNGQSFDINDMDNHGPEINLRLAAIIDADYV
PDINMRLSLYKRISSCKTENELNDLQIEMIDRFGLLTDPCKNLFKQTALKLQVEPLGIKK
IDMGDKGGTIEFSSQTTIDPFILVQLIQSMPQMFKLNKGDQLKFFIESEKETRFERLNEI
LKLISKKPNS
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
atgagcttcacgttaccaaaagggtcttctgaccaacgtacattgtttaatctttcaggc
agtgctcaaggatattatattgcccaaagttgtgcgcaaactaagcgccctattttggtg
atttgcgattctatcgcgcaagctcaagcccttgaggtgcaaactcagttttatttagat
aaatcgatcaccactaagcagtttgtggattgggaaacgctgccctatgatcagttttct
cctcatcaagatattatttctgagcgtatagaattattggcatcgttgtctaaccaagct
cagcaaattattttttgttcggtcaataccctattgactcgtttgcctcctagctctttt
attgctcaacattctttttgtttaaagcttaatcaagtgttagacgttgaacattttaga
aacaacctagtacaggcgggttatcaaaacgttgaagcggtttatgaacatggcgatttt
gcggttcgtggggcaattattgacgttttccccatgggcagtgagttccctgtacgtatt
gagcggtttgacgatgaaattgatacgctgcgttattttgaccctgaaactcagcgttca
ttagaaaaaatatcagaattggtgttattaccgggtaaagaattctcgttaaccaaagaa
tccgtcaactcattcagaagtcgttttcgtgaacaattcgcaattaacacccaagattgc
ccgttatatcaagatatcattcaaggtgtggtgcctgccggtattgagtattatttaccg
ttattttttgatcaaactcagcacttttttgattatttaaatgatgattggttagtgatt
tgctctgaaaatttagaacgcagcatggacaagcaattagctgatattcatcatcggtat
gaaaaccagcgacacaatattgttcacccgattttaccccctgaatcgttgtattttcat
aaagaagaattttttaaatccctaaaacaatttgcgcgtttaaatttaagcactcaactt
ggtgaagacaaacctgccgctggtaagtatcaggcaaacgtggacaaaagtgagaatttc
tacgttgatagtactcatgaacgtccattaatcttatttgaaaatcactttttagatgat
caaaaaagaatgttaatttgtgctgagtcattaggtcggcgtgaaattctattaggttta
tttaaacgccaaaacctgactattaaacaagttaacagttttcaagaatttttggattca
actgaaccgctttgtttgaccgttgcgccgttagatgaaggcttggttctgcctgagtta
aacattgaagtcatctgtgagcctcaattatttggccagttcattgtgcagcagcgtcaa
cgaaaacgctctgccaaaagtgaaaaccccgatttaattgttaaaaacttaactgaatta
aatataggtgcgcctgttgtgcatttagatcacggcgtgggtcgatatttagggttacag
tccttagaagtagatgggcaagttcaagagtttttacaattagaatacgcaagtgacgcc
aagctatatgtgcccgttgggttattgcatttaatcagccgctacagtgcaagcgaagaa
gcaagcgcgccactgcatcgcttaggcactgaaaaatggtcaaccgccaaacgcaaagcc
gttgaaaaaatacgggataccgcagcggaacttttaaatatttacgccaaacgcgaagcc
aaacagggttatgcgtttaagccttgcgatgccgattatcgtgaatttgcacaaggcttt
gcctttgaagaaaccccggatcaagaagccgccattaatgcggtgattcaagatatgtgt
cgcacacgaccaatggatcgattggtgtgtggtgatgtgggttttggtaaaacagaagtg
gcgattcgagcggcttttttagcggctcaatccggtaaacaagtggctattttggtgcca
acgacgctattggctcaacagcattttgaaaatttttcagaccgatttgctaactggcct
atcaatatcggcttgttatcacgatttactgcctcaaaagtcaccaaacagaccttgtta
ggattggaatctggaaccattgatattgtgattggcactcacaaattattatctgccgat
gttaaattcaaagatttaggtttattagtcatcgacgaagagcatcgttttggtgtgcag
caaaaagaaaaagtcaaagcattacgtgccgatattgatattttgacccttactgccaca
ccaatccctcgtacattaaatatgtcgatgtcagcgattcgagatttatctattattgct
acgcctccagcgcgtcgtttgtctgtcaaaacctttgtgcgcgaatacgatgacgacatc
atcaaagaatccattttgcgtgagattttacgtgggggtcagatctatttcttacataat
agtgtaaaagacatagaaaaaacaaaaaataaattacaagaattgatccctgaagcccgc
ataggcattggtcacggacaaatgaacgaacgagagttagagcgagtgatgcaggatttt
tatcaccgccgattcaacgtgttgttgtgtaccaccattattgaaaccggtattgatatc
ccttcggcaaataccatcattattgagcgtgctgacaaatttggtttggcgcaattgcac
caattacgtggtcgtgtgggccgatctcatcatcaagcctattgttatatgttaacgcct
cctgctgctaatttaacaaaagatgccatcaaacgtttagaagccattgaaggggcgcaa
gacttaggagccggcttcacattagctacccacgatctagaaatccgtggcgcaggtgag
ttattaggcgaggatcaaaccggtcacattgaaggcattgggtttagtttatacatggac
atgcttgaaaaagcggtcaacgccattaaaaatggacaaagttttgatattaatgacatg
gataatcatggccctgaaatcaaccttagattagcggctataattgatgcggactatgtg
cccgacattaatatgcgtttgagtttatataaaagaatttccagttgtaaaacagaaaat
gaactcaatgatttacaaattgaaatgattgatcgctttggtttgttaactgatccatgt
aaaaatctattcaaacaaactgcattaaaattacaagtggaacctttagggattaagaaa
atcgatatgggtgacaaaggtggtactatagagttttccagtcaaacaacaatcgacccc
tttatattggttcagttaattcagtctatgcctcaaatgtttaaattaaacaaaggtgac
cagttaaagttttttatagaaagtgaaaaagaaacgcgttttgaacgcttaaatgaaatt
ttaaaattaatcagtaaaaagccaaattcatga
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