Marinicellulosiphila megalodicopiae: TYM08_P2214
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Entry
TYM08_P2214 CDS
T10978
Name
(GenBank) excinuclease ABC subunit B
KO
K03702
excinuclease ABC subunit B
Organism
mmeg Marinicellulosiphila megalodicopiae
Pathway
mmeg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
TYM08_P2214
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmeg03400
]
TYM08_P2214
DNA repair and recombination proteins [BR:
mmeg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
GGR (global genome repair) factors
TYM08_P2214
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
TYM08_P2214
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrB_inter
UvrB_3rd
Helicase_C
UvrB
ResIII
UVR
DEAD
DUF87
AAA_22
Kinesin
Viral_helicase1
CoV_RPol_N
Motif
Other DBs
NCBI-ProteinID:
BCE02151
LinkDB
All DBs
Position
2619087..2621090
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AA seq
667 aa
AA seq
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MSRPLKVVSNYKPAGDQPQAIKLLVEGINAGLAAQTLLGVTGSGKTFTIANIIEQTGRPA
IIMVHNKTLAAQLYGEFKEFFPNNAVEYFVSYYDYYQPEAYVAASDTFIDKDSSVNEHIE
QMRLSATKALLERNDCIVIATVSAIYGLGSPESYLKMILHISVGQIVNQRDILRQLAQLQ
YVRNDVDFFRGQYRVKGDVIDIFPAESEIEALRIELFDDEVERLTLFDPLTNENLRKVPR
FTVYPKTHYATPKDIILKACDQIKVDLKARLEFFHQENRLVEAQRIEQRTNYDLEMMQEL
GFCTGIENYSRYLTGAEPGQAPPTFFNYLPKNALLFIDESHVTIPQIGAMYKGDRSRKEN
LVNYGFRLPSALDNRPLRFEEWERLAPQAVYVSATPSKYEAEHAQAVVEQLVRPTGLLDP
IIEVRPQSTQVDDLLEEIRVITAKDERVLVTTLTKRMAEDLTDYFTEHGIKVRYLHSDID
TVERTEIIRDLRLGEFDVLVGINLLREGLDMPEVSLVCILDADKEGFLRSERSLIQTIGR
AARNINGRAILYADKITDSMRKAIDETQRRREKQIIHNKKLGITPQAIVKSVRDIMEAVP
GKAARREQVKEHNLKEYDRSTEQMNPSQLVKEIGRLEDLMYKASKAMEFEKAASIRDQWI
KLKEKLK
NT seq
2004 nt
NT seq
+upstream
nt +downstream
nt
atgagccgccctttaaaagttgtatccaattacaaacctgctggtgaccaaccacaagcg
atcaaactattggtcgaaggaattaacgcaggtttagccgcgcaaaccttacttggggta
acgggctcaggcaaaacatttaccattgcaaacatcatcgaacaaaccggtcgccctgcg
atcattatggtgcacaacaaaaccttagcagcccaactttatggagaatttaaagagttc
ttccctaataacgccgttgaatattttgtgtcttattacgattattatcagcctgaggca
tatgttgcggcctctgatacgtttattgataaagactcctccgttaacgagcacatcgaa
cagatgcgtttatctgctaccaaagcactacttgaacgaaacgactgcattgtgattgca
acggtttcggccatttacggccttggctctcctgaatcttatttaaaaatgattttgcac
attagcgttggtcaaatcgtaaatcaaagagatattttgcgtcagttagcgcaattgcaa
tatgttcgaaatgatgtggatttttttcgtgggcaatatcgcgttaaaggtgatgtgatt
gatatatttcctgctgaatctgaaattgaagcactgcgtattgagttatttgacgacgaa
gttgaacgccttacattgtttgatccattaactaatgaaaacttaagaaaagtgccgcgc
tttacggtttaccctaaaactcattacgcaacacctaaagacattatcttaaaagcctgc
gaccaaattaaagtagacttaaaagcgcgtcttgagttttttcatcaagaaaatcgatta
gtcgaagcacagcgtattgaacaacgcaccaattacgatttagaaatgatgcaagagctt
gggttttgcacaggcattgaaaactactcgcgctatttaaccggagcagaaccaggtcaa
gcgccgcctactttttttaattacctaccaaaaaacgcattgttgtttattgatgaatct
cacgtcaccattccgcaaattggcgccatgtataaaggcgatcgatctcgaaaagaaaac
ttagtcaattacggctttcgtttaccctctgcattagacaaccgccctcttcgctttgaa
gaatgggaacgcctagcacctcaagcggtttatgtgtcggcaacgccatctaaatacgaa
gcagaacacgcacaagcagtagttgagcaattagttcgcccaactggcttattagaccct
atcattgaagtgcgtccacaaagcacacaggttgacgatttacttgaagaaattcgagta
attactgcaaaagacgagcgtgtattagtcaccaccctcaccaaacgtatggccgaagat
ttaaccgattacttcaccgagcacggcattaaggttcgatatttacattctgatatcgac
acagttgaacgcaccgaaattattcgcgatttacgcttaggtgaatttgacgtgcttgtt
ggtatcaatttattgcgcgaaggattagatatgcctgaagtatctctagtgtgtatttta
gatgcagacaaagaaggttttttacgctcagagcgatcgttaatccaaaccattggtcgt
gctgctcgtaacattaatggtcgtgcgattttatacgccgataaaattacagactccatg
cgtaaagccattgatgaaactcagcgccgccgtgaaaaacaaatcattcataataaaaaa
ttaggcattacacctcaagccatcgttaaatcggtgcgagacatcatggaagccgtgcct
ggaaaagcggcaagacgcgaacaggttaaagaacacaatttaaaagaatacgaccgaagc
actgaacagatgaatccatcacaactcgttaaagaaataggccgattggaagatttgatg
tacaaagcctctaaagcaatggagtttgaaaaagccgccagcattcgcgatcagtggatc
aaactgaaagaaaaactaaaataa
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