Marinicellulosiphila megalodicopiae: TYM08_P2587
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Entry
TYM08_P2587 CDS
T10978
Name
(GenBank) primosomal protein N'
KO
K04066
primosomal protein N' (replication factor Y) (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mmeg Marinicellulosiphila megalodicopiae
Pathway
mmeg03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmeg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
TYM08_P2587
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmeg03400
]
TYM08_P2587
Enzymes [BR:
mmeg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
TYM08_P2587
DNA repair and recombination proteins [BR:
mmeg03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
TYM08_P2587
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PriA_3primeBD
PriA_C
DEAD
ResIII
Helicase_C
Zn_ribbon_PriA
WHD_PriA
AAA_30
TrwB_AAD_bind
AAA_22
SLFN-g3_helicase
nSTAND3
ADDB_N
DUF87
PHF5
nSTAND_NTPase5
ATPase_2
AAA_19
SRP54
Zn_ribbon_6
T2SSE
Motif
Other DBs
NCBI-ProteinID:
BCE02524
LinkDB
All DBs
Position
3060416..3062575
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AA seq
719 aa
AA seq
DB search
MTLFVEVALPVRVNTPFTYQLSTDEPLDAGTRVLVPFNAKQLVGIVLCCKNEIDFDPKKV
KPVTKVLDTTPALSADMLELARWVSQYYHYRLGECLSLMLPKGLRGDNPAQKSTVSVTQL
TDKGKLVHPNQLAKKPKQQAWLSQLNSQAAISSKQATSLELSPSSRNTLIKQGLVVKTDL
PIPILHNQATDPNALELNTEQQTVLDNIALDAGFQCHLIFGVTGSGKTEVFLQLMQQVLD
QNKQVLILVPEISLIDQTIKRLKARFDTTFALLHSGLNDTQRNDAWLDARSGDARIVLGT
RSSVFCTLPDLGLIIVDEEHDGAYKQNDTLRYHGRDVAIVRAQKQNIPVVLASATPSLES
LHNALNNRFVLHRLTQRAANAQMPFIEMVNLKQHEPVDGISQPLHSRIQQHLEHNKQVLL
FLNRRGFAPTVMCTECGWQAVCHQCDARLTLHKNQLICHHCNQSQPILRQCKSCSSHSLT
AIGNGTVRSEMYLETHFPNTHIIRLDKDSTQTKDALKTQLEIISNGEPCIIIGTQMLAKG
HHFDQVTLVGVLDCDSGLFSADFKGEERTLQLLTQVAGRSGRAKDLGEVLIQTYHPTHPL
FQAIENNQYEFYAQQLLDARHDMLLPPFNFSALIQADHQYAYTAESALIALKQIPLPPQV
DCIGPMPAFMAKLANRYRFHLVLKSQHRSQLHMAITILQNALQKQSKVRWFIDVDPNEL
NT seq
2160 nt
NT seq
+upstream
nt +downstream
nt
atgacattgtttgtagaagttgccttacccgttcgagtgaacacgccattcacctatcag
cttagcaccgatgagcctttagatgcaggcactcgcgttttagttccctttaatgcaaag
cagttggtaggcattgtgttgtgttgcaaaaatgagattgattttgaccctaaaaaggtc
aaaccggtcaccaaagtactcgatacgactcccgctttaagcgccgacatgcttgaattg
gctcgctgggtttcgcaatattaccactaccgtttgggcgaatgtctgtctttaatgctc
ccaaaaggcctgcgcggcgacaatcccgcacaaaaatcgacggtatcggtgacgcagtta
actgataaaggaaaattagttcaccctaatcagttagccaaaaaacccaaacaacaagct
tggttaagccagcttaattcgcaagcggcgattagtagtaaacaagccacctcgttagag
ttgtcgccctcgtcacgcaatacattaatcaaacagggcttggtggttaaaaccgactta
cccatcccaattttgcataatcaggctactgatcccaacgcccttgaattgaatactgaa
caacaaacggttttagacaacattgcgttagatgctgggtttcagtgccatttaatattt
ggtgtcacaggttctggtaaaaccgaagtgtttttgcaattgatgcaacaggtgctggac
caaaacaaacaggtgttaattttagtacctgaaatcagtctaatcgaccaaaccattaag
cgcttaaaagcccgttttgatactacctttgcgttattacactctgggttaaacgacacg
caacgtaatgacgcttggttagatgctagatcaggtgacgcgcgtattgttttgggtact
cgctctagtgtgttttgcaccctacctgatttaggtttgatcattgtcgatgaagaacac
gacggcgcttacaaacaaaacgacacgttgcgatatcatggtcgagacgtggcgattgtg
cgcgcacaaaaacaaaatattcccgtggtattggcaagcgcaacgccgtcgttagagtca
ttgcacaacgcgctaaataatcgatttgtattacatcgattaacccaacgtgccgccaat
gcgcaaatgccgtttattgaaatggtgaatttaaaacaacacgagcccgttgatggcatc
agtcagccgcttcactcaagaattcaacagcatttagaacacaacaaacaagtattattg
tttttaaatcgccgtggttttgcccctactgtgatgtgtacagaatgtggctggcaagcg
gtgtgtcatcaatgcgacgcgcgtttaacgctacataaaaaccagctcatttgtcatcac
tgcaatcagtctcaacccatattacgccaatgtaagtcttgctcgtcacacagcctaacg
gctattggtaacggtacggttcgcagcgaaatgtatttagaaacgcactttcctaatacc
catattattcgtttagacaaagacagcacccaaaccaaagacgcgcttaagactcagcta
gagatcatttcaaacggtgagccctgcattattattggcacacaaatgctggcaaaaggg
catcattttgatcaagtgaccttagtgggcgtgttagattgtgactcaggattattcagt
gccgactttaaaggcgaagaacgcaccttacagttattgacccaagtggctggcagaagt
ggtcgcgctaaagatttaggcgaagtgttgatacagacctatcatcctactcacccttta
tttcaggcgattgaaaacaaccaatatgagttttacgctcaacagcttttagatgcacgc
cacgacatgttattgccgccgtttaatttcagcgcattaattcaggcagatcaccaatat
gcttacaccgcagaaagcgcactcattgcattaaagcaaataccgttaccaccacaggta
gactgcattgggccgatgcctgcgtttatggcaaagctggccaatcgctatcggtttcat
ttggtacttaaaagtcagcatcgctcgcagttgcacatggccatcaccattttacaaaac
gcattgcaaaaacaaagcaaagtgcgttggtttattgatgtggaccctaacgagttgtaa
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