Marinicellulosiphila megalodicopiae: TYM08_P3381
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Entry
TYM08_P3381 CDS
T10978
Name
(GenBank) exoribonuclease II
KO
K01147
exoribonuclease II [EC:
3.1.13.1
]
Organism
mmeg Marinicellulosiphila megalodicopiae
Brite
KEGG Orthology (KO) [BR:
mmeg00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmeg03016
]
TYM08_P3381
Enzymes [BR:
mmeg01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
TYM08_P3381
Transfer RNA biogenesis [BR:
mmeg03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
TYM08_P3381
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Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
zf-C2H2_2nd_ZNF462
Motif
Other DBs
NCBI-ProteinID:
BCE03318
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Position
4003913..4005799
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AA seq
628 aa
AA seq
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MLDLNALSQLKDLKSALHEDTKFSQGTVMGSFGRYGFVQNEKERIYLSSEQMSLTLIDDT
IEYSVTEVNGKQNAIVESIVKSKLKELIGKYVIKGKGHFVEALDSRIQTRIYIPETLRNK
AVENDIVRIKISKHPFKSEGNTQAKITEILGNLSDAGIWHKASIAHYELNTPTDLTDDEQ
KQYLSTFESTVHSRKNNNQDLTHLDFFTIDSQSSKDLDDAICVEKSNDKYTLHIAIADPS
ALINSDDILYKQALESCTSVYLPGKTIPMLPSFISNTLCSLLPNEERLAFVVTFEFDDTF
KLIDSSISSSVIQSKRQYSYDEADTLIDSDKNLSVLKEITDSFFENRSNNEIIMQQSNDY
QFNLNDDLTLDKITIKPISASAKMIEECMVFSNKWIASFLNKHDLGLFISQAGLRNNAKA
QAIEFLNENITDFSEEKLSEPSYFTQCFNQLTHKQQLCIQKRLDRSEVTTKSANHWAMGI
EQYCTFTSPIRKVNDFINHQFLHHIINKKAKPFVDKNILAQLNSQTRNARQASNQVENQI
RIDSIADDEIFDATINHATPGSIICQITSIGGQCQYNLRKVKTAFNPLDFSHTIKKTTYN
LNDEVQVKITKKDSFSGILECVIIENDE
NT seq
1887 nt
NT seq
+upstream
nt +downstream
nt
atgctagatctcaatgcactttcccaacttaaagatttaaaatcagcacttcatgaagat
acaaaattttcccaaggcaccgttatgggtagctttggcagatatggatttgttcaaaat
gaaaaagaacgcatctatttatcttcagaacaaatgtcacttacactgattgatgacacc
atcgaatacagcgtgacagaagttaatggaaagcaaaacgcaattgttgaaagtattgtt
aaaagcaaacttaaagaattgattggtaaatacgtcattaaaggcaaagggcattttgtt
gaagcgctggacagccgaattcaaacccgtatttatattcctgaaaccctaagaaacaaa
gcagtggaaaacgacattgttcgcatcaaaattagcaaacacccgtttaaatctgaaggc
aatacacaggctaaaatcacagaaattttaggcaatctgtctgatgctggcatttggcac
aaagcctcaattgcacattacgaattaaatacgccaactgatttaaccgatgacgagcaa
aaacaatacttatccacatttgaatcaaccgtacattcaagaaaaaataacaaccaagat
ttaactcatttggattttttcacaattgattcacaatcaagcaaagatttagatgatgca
atttgtgtagaaaaatcaaatgacaaatatacattacacattgccattgctgacccaagt
gcgttaattaatagcgatgacatactttacaaacaagcattagaatcttgcaccagcgta
tatttaccgggcaaaaccattccaatgctgccttcttttattagcaatacattatgctcg
ttattacctaacgaagaacgcctagcatttgtcgtcacatttgaatttgatgacaccttt
aagttaatcgacagttcaatttcttcaagtgtcattcagtcaaaaagacaatacagctac
gatgaagctgatacattaatagacagcgacaaaaacttatctgtattaaaagaaattacc
gattcattttttgagaatcgctcaaacaatgaaatcatcatgcaacaatctaacgattat
caatttaatttaaatgatgatttaactttagataaaatcacaatcaaacctatttcagca
agcgccaaaatgattgaagaatgcatggttttttcaaataaatggatcgcatcttttcta
aataaacacgatttgggtttatttattagccaagcaggtttaagaaataacgcaaaagca
caggccattgaatttcttaatgaaaatatcactgacttttctgaagaaaaactaagcgag
cctagctactttacacaatgctttaatcaactaactcacaagcaacagctttgcattcaa
aaacgcctagaccgctccgaggtcaccactaaaagcgcaaatcactgggcaatgggtatt
gagcaatactgcactttcacttcacccattcgtaaagtgaatgattttattaatcaccaa
tttttacatcatatcattaataaaaaagcaaaaccctttgtagataaaaacatacttgcg
caacttaattcacaaacaagaaatgcaagacaggcatcaaaccaagttgaaaatcaaatt
agaattgactcaatcgctgatgatgaaatatttgacgcgacaatcaatcacgcaacaccg
ggtagtattatctgccaaataacatctatcggtggacaatgccaatacaatttaagaaaa
gttaaaactgcatttaaccctttagatttcagccacaccattaagaaaacaacttacaat
cttaatgatgaagtccaagttaaaatcaccaaaaaggacagtttttcaggtattttagaa
tgcgttattattgaaaacgatgaataa
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