Candidatus Mycobacterium methanotrophicum: M5I08_02925
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Entry
M5I08_02925 CDS
T08748
Symbol
recB
Name
(GenBank) exodeoxyribonuclease V subunit beta
KO
K03582
exodeoxyribonuclease V beta subunit [EC:
3.1.11.5
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
M5I08_02925 (recB)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmeh03400
]
M5I08_02925 (recB)
Enzymes [BR:
mmeh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.5 exodeoxyribonuclease V
M5I08_02925 (recB)
DNA repair and recombination proteins [BR:
mmeh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
RecBC pathway proteins
M5I08_02925 (recB)
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
UvrD-helicase
AAA_19
UvrD_C
PDDEXK_1
UvrD_C_2
AAA_30
AAA_25
Motif
Other DBs
NCBI-ProteinID:
UQX11483
UniProt:
A0ABY4QMF4
LinkDB
All DBs
Position
542252..545533
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AA seq
1093 aa
AA seq
DB search
MDRFELLGPLPKAGSTTVLEASAGTGKTFALAGLVTRYLAETDATLDEMLLITFNRAASR
ELRERVRSQIFDAVSALDGRVPPGSDLVEHLVRAGGDERARRRARLRDALAHFDAATIAT
THEFCGSVLKSLGVAGDTAADAKLKESLDDLVTEIVDDLYLARFGRQDSAPVLTYKDALT
LARTVVNDPCAQLRPLDPEPDTTATVRLRFVTDVLNELEQRKRRLRILGFDDLLTRLAKA
LEAQDSPARDRMRARWRIVLVDEFQDTDPIQWRVLECAFAGHSRLILIGDPKQAIYGFRG
GDIYTYLTAARTADARYTLGVNWRGDRALVDSVQTVLRGAALGHPEIVVHDVDAHYDGHR
LADAPRNAPFRLRVVKRPTLGYGAVEDTANVPIDALRRHIPDDLAADIAALLASDARYDG
RHVRAGDIAVIVENHKDARPCRDALAAAGIPAIYTGDTDVFGSEAAKDWMCLLEAFDAPN
RSGLVRAAACTMFFGETAETLAADGDTLTDRVAATLREWANQARQRGVAAVFEAAQLRGM
GRRVLRQQGGERQMTDLAHIAQLLHQTAHRERYGLPALRDWLRRQCDGRDRAAEHNRRVD
SDAAAVQIMTVFVAKGLQFPVVYLPFAFNRNVRRDDILLYHDEKDTRCLHIGGKDSPDRR
DVEQLHRTEEARNNIRLTYVALTRAQTQVVAWWAPSWDERNGGLSRLLRGRDIGEADVPD
TCESAITDEDAWALFTKWQAEGGPSVEESVIGSPAAAEELPPAADFEVRHFHRTIDTSWR
RTSYSALVRGAEPVGVQSEAEVNARDDEVEGVVVTSPSPVSDVASPMAAMPSGATFGSLV
HAVLETADPGAADFAAELEAQAARQLRWWSVDVTATELAAALVPMHETSLGPLADGMTLR
QIGLRDRLRELAFEIPLAGGDVRGAAPNVSVSDVGELLRAYVAADDPVAPYADRLLSTGL
GGQSLRGYLAGSIDVVLRLPDFRFLVVDYKTNYLGENAADYSQARLAEAMLHSDYPLQAL
LYIVVLHRFLRWRVPDYDPTRHLGGVLYLFVRGMCGADTPVIDGQPCGVFSWQPPAELVV
ALSDLLDEGSHAA
NT seq
3282 nt
NT seq
+upstream
nt +downstream
nt
atggaccggttcgagttgctggggccgctgcccaaagcgggctccaccaccgtgctggag
gccagtgccggcaccggcaagactttcgcgctcgccgggctggtcacccgatatctcgcc
gaaaccgacgcgacgctcgacgagatgctgctgatcacgttcaaccgcgcggccagccgg
gagctgcgtgaacgcgtgcgcagccagatcttcgacgcggtttccgccctggacggtcgc
gtgccacccggcagcgaccttgtcgagcatctcgtgcgcgccggcggcgacgaacgcgca
cgcaggcgggcacggcttcgcgacgcgctggcgcatttcgacgcggcgaccatcgccacc
acacacgagttctgcggatcggtgctgaagtctcttggcgttgcaggtgataccgccgcc
gacgccaaactcaaggaaagcctcgatgacctagtcaccgaaatcgtcgacgacctttac
cttgcgcggttcgggcgccaagacagcgctccggtgctgacctacaaggacgcgctcacc
ctcgcccgcactgtcgtcaacgacccatgcgcgcaactgcgaccgcttgatcccgagccg
gacaccacggccacagtgcggttgcgcttcgtcaccgatgtgctcaacgagctcgagcag
cgcaagcgccggctgcgcatcctgggtttcgacgacctgctcacccggctcgcgaaagcc
cttgaggcgcaagactctccggcccgcgaccggatgcgggcccgctggcgcatcgtcctg
gtcgacgagtttcaagacaccgacccgatccaatggcgggtgctggagtgcgcgttcgcc
ggccattcgagactgatcctgatcggcgaccccaagcaggccatctacggtttccgcggc
ggcgacatctacacctacctcacggcggcccgcacggccgacgcccgctacacgctgggt
gtcaactggcgcggcgaccgcgcgctggtcgacagtgtgcagacggtgctgcgcggggcc
gcgctgggccaccccgagatcgttgtccacgacgtcgacgcccattacgacggacatcgg
ctggccgacgcgccgcgcaacgcaccgtttcggctgcgcgtggtcaaacggcccaccctc
ggctacggagccgttgaagacaccgccaacgtcccgatcgacgcgctgcgccgccacatt
cccgacgacctggcggccgacatcgcggcgctgctggccagcgacgccaggtatgacggc
cgtcatgttcgcgccggggatatcgcggtgatcgtcgaaaaccacaaggatgcgcggccc
tgccgcgatgcgttggcggcggcgggtatcccggcgatctacaccggcgacaccgatgtg
ttcggctccgaggcagcgaaagactggatgtgcttgctggaggcattcgacgcaccaaac
cgcagcgggctggtccgcgccgccgcctgcacgatgttcttcggcgagacggcggaaacc
cttgccgccgacggtgacacgctcaccgatcgcgtggcggccacactgcgggagtgggca
aaccaggcccggcagcgcggggtggcggcggtattcgaggccgcccagctgcgcggcatg
ggccgtcgggtgctgcgccagcagggcggcgagcggcagatgaccgacctggcgcacatc
gcgcagctgctgcaccagacggcgcatcgggaacggtacggtcttccggcactgcgtgat
tggctgcgacgtcagtgcgacggccgcgaccgcgcggctgagcacaaccgccgcgtggac
agtgacgccgcggcggtgcagatcatgacggtgttcgtggccaagggtctgcagtttccg
gtcgtgtatttgccgttcgcattcaaccgaaatgtccgcagggacgacattctgctgtac
cacgacgagaaggacacccgctgcctgcacatcggcggcaaggacagtcccgatcgccgc
gacgtcgagcagctgcaccggaccgaagaggcccgcaacaacatccggctcacctacgtc
gcgctcacccgggcccaaacacaggtggtggcgtggtgggcgccgtcatgggatgagcgc
aatggcggcctgtcgcgattgttgcgcggacgcgacatcggcgaggccgacgtgcccgac
acatgcgaatcggccatcaccgacgaagatgcatgggcactgttcacaaagtggcaggcc
gagggcgggccgtcggtggaggaatcggtgatcggctcccccgccgctgccgaagagttg
ccgccagcggcggatttcgaggtgcggcactttcaccgcaccatcgacaccagttggcgg
cggacctcgtattcggcgttggtacgcggcgcagaaccggtcggcgtgcagagcgaggcg
gaggtcaacgcgcgcgacgacgaggtggagggcgttgtcgtcacctcgcccagcccggtt
agcgacgttgcctcaccgatggcggcgatgccgtcgggtgcgacgttcggctcgctggtg
cacgcggtgctggagaccgccgatcccggcgctgcggacttcgccgccgaactcgaggct
caggcggcacggcagctgaggtggtggtcggtggacgtgacggccaccgagttggcggca
gcgttggtgccgatgcatgagacgtcgttgggtccgctggcggacggcatgacgttgcgg
cagatcggtctgcgggatcggttgcgggaattggccttcgagatcccgctggccggcggc
gatgtgcgcggcgctgcgccgaatgtgtcggtgtccgatgtgggtgagttgctgcgcgct
tacgtggcggccgatgacccggtggcgccgtatgccgatcggcttttgtcgacggggttg
ggcggccagtcgctgcgcggatatctggcgggctcgatcgacgtggtgctgcggctgcct
gacttccgtttcctggtggtggattacaagaccaactatctcggcgagaatgccgccgac
tacagccaggcgcggttggccgaggcgatgctgcactcggactatccgctgcaggcgctg
ttgtacatcgttgtgctgcatcgctttctgcggtggcgggtgccggattacgacccgaca
cggcatctcggtggggtgctgtatctgttcgtgcgcggcatgtgcggtgctgacacaccg
gtgatcgacggtcagccgtgcggggtgttcagctggcagcccccggccgagctggtggtg
gcgctctcggatctgctcgacgagggaagccacgcagcatga
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