Candidatus Mycobacterium methanotrophicum: M5I08_03415
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Entry
M5I08_03415 CDS
T08748
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M5I08_03415
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmeh03021
]
M5I08_03415
03400 DNA repair and recombination proteins [BR:
mmeh03400
]
M5I08_03415
Enzymes [BR:
mmeh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M5I08_03415
Transcription machinery [BR:
mmeh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M5I08_03415
DNA repair and recombination proteins [BR:
mmeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M5I08_03415
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Motif
Other DBs
NCBI-ProteinID:
UQX11555
LinkDB
All DBs
Position
628443..632405
Genome browser
AA seq
1320 aa
AA seq
DB search
MLDVNFFDEVRIGLATAEDIRQWSYGEVKKPETINYRTLKPEKDGLFCEKIFGPTRDWEC
YCGKYKRVRFKGIICERCGVEVTRAKVRRERMGHIELAAPVTHIWYFKGVPSRLGYLLDL
APKDLEKIIYFAAYVITAVDDEMRHNELSTLEAEMVVERKAVEDQRDADLEARAQKLEAD
LAELEAEGAKADARRKVRDGGEREMRQLRDRAQRELDRLEEIWTTFTKLAPKQLIVDENL
YRELVDRYGEYFTGAMGAESIQKLIENFDIDAEAETLRDVIRNGKGQKKLRALKRLKVVA
AFQTNRNSPMGMVLDAVPVIPPELRPMVQLDGGRFATSDLNDLYRRVINRNNRLKRLIDL
GAPEIIVNNEKRMLQESVDALFDNGRRGRPVTGPGNRPLKSLSDLLKGKQGRFRQNLLGK
RVDYSGRSVIVVGPQLKLHQCGLPKLMALELFKPFVMKRLVDLNHAQNIKSAKRMVERQR
PQVWDVLEEVIAEHPVLLNRAPTLHRLGIQAFEPMLVEGKAIQLHPLVCEAFNADFDGDQ
MAVHLPLSAEAQAEARILMLSSNNILSPASGRPLAMPRLDMVTGLYFLTTEIAGDTGEYQ
PAATDRPESGVYASPAEAIMAMDRGALSVRAKIKVRLSELRPPVELETELFGQNGWQPGD
SWIAETTLGRVMFNELLPIGYPFVNKQMHKKVQAAIINDLAERYPMIVVAQTVDKLKDAG
FHWATRSGVTVSMADVLVPPGKQEILDAYEERADKVEKQFQRGALNRDERNEALVEIWKE
ATDEVGEALREHYPSDNPIITIVDSGATGNFTQTRALAGMKGLVTNPKGEFIPRPIKSSF
REGLTVLEYFINTHGARKGLADTALRTADSGYLTRRLVDVSQDVIVREADCGTERGIVVE
LAQRQPSVDGKATLIRDPFIETSAYARTLGTDAVDEEGNVVIARGHDLGDPEIEALLAAG
ITQVKVRSVLTCTTGTGVCATCYGRSMATGKLVDIGEAVGIVAAQSIGEPGTQLTMRTFH
QGGVGEDITGGLPRVQELFEARVPRGKAPIADVTGRVRLDEGERFYKITIVPDDGGEEVV
YDKLSKRQRLRVFKHEDGSERLLADGDHVEVGQQLMEGSADPHEVLRVQGPREVQIHLTK
EVQEVYRAQGVSIHDKHIEVIVRQMLRRVTIIDSGATEFLPGSLIDRAEFEAENRRVVAE
SGEPAAGRPVLMGITKASLATDSWLSAASFQETTRVLTDAAINCRSDRLNGLKENVIIGK
LIPAGTGINRYRNIQVQPTEEARAAAYTIPSYEDQYYSPDFGQATGAAVPLDDYGYSDYR
NT seq
3963 nt
NT seq
+upstream
nt +downstream
nt
gtgttagacgtcaacttcttcgatgaagtccgcattggtctggcgaccgcggaggacatc
cggcaatggtcttacggcgaagtcaagaagccggagacgatcaactaccgcacgctgaag
ccggagaaggacggcctgttttgcgagaagatcttcggacccactcgcgactgggagtgc
tactgcggcaagtacaagcgcgtgcgcttcaagggcatcatctgcgagcgctgcggtgtc
gaggtgacgcgcgccaaggtgcgtcgtgagcggatgggccacatcgagctggccgcgccg
gtgacccacatctggtacttcaagggtgtgccttcgcggttgggttacctgctcgacctg
gcgccgaaggatctggagaagatcatctacttcgccgcctacgtcatcaccgccgtcgac
gacgagatgcgccacaacgagctgtccacgctggaggccgaaatggtcgtggagcgcaag
gctgttgaggaccagcgcgacgccgacctggaggcgcgcgcgcagaagctggaagccgac
ctggccgagctggaagcagagggcgcgaaagccgatgcgcgccgcaaggtccgtgacggc
ggcgagcgggagatgcgccagctgcgcgatcgcgcgcagcgcgagctggatcggctggag
gagatctggaccaccttcaccaagctggctcccaagcagctgatcgtcgacgagaacctc
tacagggaactcgtcgaccgctacggcgagtacttcaccggcgccatgggcgcggagtcg
atccagaagctcatcgagaacttcgacatcgacgccgaggccgagacgttgcgtgatgtc
atccgaaacggcaaggggcagaagaagcttcgcgcactcaagcggctcaaggtggtcgcc
gcattccagacgaaccgcaactcgccgatgggcatggtgctcgacgcggtcccggtgatc
ccgccggaactgcggccgatggtccagctcgacggtggccggtttgccaccagcgacctc
aacgacctgtaccgccgggtgatcaaccgcaacaaccggctcaagaggctgatcgacctc
ggcgcgcccgagatcatcgtcaacaacgagaagcggatgctgcaagagtccgtcgacgcg
ctgttcgacaacggccgtcgcggccgcccggtcaccgggccgggcaaccgtccgctgaaa
tcgctttcggatctgctcaaaggaaagcagggccggttccggcagaacctgctcggtaag
cgtgtcgactactcgggccgttcggtcatcgtggtcggcccgcagctcaagctgcaccag
tgcggtctgcccaagctgatggccctcgagctgttcaagccgttcgtgatgaagcggctt
gttgacctcaaccacgcgcagaacatcaagagcgccaagcggatggtggaacgacagcgt
ccgcaggtgtgggatgtgctcgaagaagtcatcgccgagcacccggtgctgctgaaccgc
gcaccgaccctgcaccggctcggtatccaggccttcgagccgatgctggtggaaggcaag
gccattcagctgcacccgttggtgtgtgaggcgttcaacgccgacttcgacggcgatcag
atggccgtgcacctgcctttgagcgcagaggcgcaggccgaggcccgcatcctgatgctg
tcttccaacaacatcctgtcgccggcttcgggtcgcccattggccatgccgcgactggac
atggtgaccgggctgtacttcctgaccaccgagatcgcaggcgacaccggcgaataccag
ccggccgccacggaccgtccggagtccggggtgtacgcctcgccggccgaggccatcatg
gcgatggaccgtggtgcgttgagcgtgcgcgccaagatcaaggtgcggctctctgagctg
cgcccgccggtagagcttgagaccgagctgttcggccaaaacggttggcagcccggtgat
tcctggattgccgagaccacgctgggccgggtgatgttcaacgagctgctgccgatcggg
tatccgttcgtgaacaagcagatgcacaagaaggtgcaggcggcgatcatcaacgacctg
gccgagcgctacccgatgatcgtggtcgcccagaccgtcgacaagctcaaggacgccggc
ttccactgggccacccgctcgggtgtcacggtgtcgatggcggacgtgctggtgccgccg
ggcaagcaggagatcctggacgcctatgaggagcgcgccgacaaggtcgaaaagcagttc
cagcgtggtgctttgaaccgcgacgagcgcaacgaggcgctggtggagatctggaaggaa
gccaccgacgaggtgggtgaggcgttgcgcgagcactacccgagcgacaacccgatcatc
acgatcgtcgactccggcgccaccggtaacttcacccagacccgggcgctggccggcatg
aagggtctggtgaccaacccgaagggtgagttcatcccgcggccgatcaagtcgtcgttc
cgcgagggactgacggtgctggagtacttcatcaacacccacggcgcccgaaagggtctg
gcggacaccgcgttgcgcaccgccgactcgggttacctgacgcgtcgtctggtcgacgtg
agccaagacgtcatcgtccgcgaggccgactgcggcaccgagcgcggcatcgtcgtcgag
ctggcccagcggcagccctctgttgatggcaaggccacgctgatccgcgacccgttcatc
gaaacctcggcgtatgcacggacattgggcaccgacgcggtggacgaggagggcaacgtc
gtcatcgcgcgtggacacgaccttggcgacccggagatcgaagcgctgctggccgccggt
atcacgcaggtcaaggtgcgttcggtgctgacctgcaccaccggcaccggggtctgcgcg
acctgctacgggcggtcgatggccaccggcaagctggtcgacatcggcgaagccgtcggc
atcgtggccgcccagtctatcggcgagcccggcacgcagctgaccatgcgcaccttccac
cagggtggtgtcggtgaggacatcaccggtggtttgccccgggtgcaggagctgttcgag
gcccgggtgccgcgcggcaaggcgccaatcgccgacgtcaccggccgggtgcggctggat
gagggcgagcgcttctacaagatcaccatcgtccccgacgacggtggcgaggaagtggtc
tacgacaagctctccaagcggcaacgcctgcgggtgttcaagcacgaggacggtagcgag
cggctgctcgccgatggcgaccacgtcgaggtgggccagcagctgatggaaggctccgcc
gacccgcacgaagtgctgcgtgtgcagggcccccgcgaggtgcagatccatctcaccaag
gaggtccaggaggtctatcgggcgcagggcgtgtcgatccacgacaagcacatcgaggtg
atcgtccggcagatgctgcgccgggtgaccatcatcgactcgggcgcaacagagtttctg
cccggctcactgatcgaccgcgcggagttcgaggccgagaaccgtcgagtggtggccgag
agcggcgagcccgccgccggtcgtccggtgttgatgggtatcaccaaggcgtcgctggcc
accgactcgtggctgagcgcggcgtcgttccaggagaccacgcgagtgctgaccgatgcg
gcgatcaactgccgcagcgaccgtctcaacggtctgaaggagaacgtgatcatcgggaag
ttgatcccggccggtaccggcatcaaccgctaccgcaacattcaggttcagccgaccgag
gaggcccgcgccgcggcgtacacgatcccgtcctacgaggatcagtactacagcccagac
ttcggccaggccaccggtgctgcggttccgctggacgactacggctactccgactaccgg
tag
DBGET
integrated database retrieval system
