Candidatus Mycobacterium methanotrophicum: M5I08_07230
Help
Entry
M5I08_07230 CDS
T08748
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
M5I08_07230
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mmeh03400
]
M5I08_07230
Enzymes [BR:
mmeh01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
M5I08_07230
DNA repair and recombination proteins [BR:
mmeh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
M5I08_07230
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UQX12100
LinkDB
All DBs
Position
1319440..1321692
Genome browser
AA seq
750 aa
AA seq
DB search
MAPRVKLTNADKVLYPATGTTKGDVFAYYTSIAAVMVPHIAGRPATRKRWPNGVDEASFF
EKQLASSAPDWLPRASVAHRSGTTTYPIIDSIDGLAWIAQQASLEVHAPQWRFEAEWTRK
GEELKPGPATRLVFDLDPGEGVTMAQLATVARAVRDLMTDVGLATFPLTSGSKGLHLYSP
LDKPVSSRGAVVLAKRVAQQLEKSMPKLVTATMTKSLRAGKVFLDWSQNNASKTTIAPYS
LRGREHPTVAAPRSWEELDDKKLRHLRYDEVLKRVERDGDLLAPLDADARTPDRLSKYRS
MRDPSKTPEPVPTSKPSIGRGNTFVIQEHHARRLHYDFRLERDGVLVSWAVPKNLPETTA
VNHLAVHTEDHPLEYGSFEGGIPKGEYGAGEVIIWDSGTYDAEKFREDEVIVTLHGQRIS
GRYALIQTDGDQWLAHRMKDQKVFQFDELVPMLATEGSVANLKAPQWAFEGKWDGYRLLV
DADYGAVRLRSRNGRDVTKEYPQLRSLARDLGDHRVVLDGEVVALDASGVPRFTEMQNRA
RSTRIEFWAFDLLYLDGRSLLRARYSDRRQLLETLAGVGGVNVPELLAGDGAEALDYSRK
HQWEGVIAKKRDSTYRPGRRSASWLKHKYWNTQEVVIGGWRAGEGGRTSGIGSLLMGMPT
ADGLHFAGRVGTGFTERDLAALKKTLKPLHTDESPFDAPLPTKDAKGVTFVKPTLVGEVR
YSEWTSDGRLRQPSWRGLRPDKESREVMRE
NT seq
2253 nt
NT seq
+upstream
nt +downstream
nt
gtggcgccgcgggtgaagctgaccaacgccgacaaggtgctctacccggcaaccgggacc
acaaaaggcgacgtcttcgcctactacaccagcatcgccgcggtgatggtgccgcacatt
gccggccgcccggccacccgcaagcgctggcccaacggcgtggacgaggcgtcgttcttc
gaaaagcagctggcctcgtcagcgccggactggctgccgcgcgccagcgttgcacaccgg
tccgggacaaccacatatccgatcatcgacagcatcgacgggctggcgtggatcgcccaa
caggcctccctggaggtgcatgcgccgcagtggcgcttcgaagccgagtggacgcgcaaa
ggcgaagaactcaagcccggcccggcgacccgcctggtgttcgacctcgaccccggcgaa
ggtgtgacgatggcccagctggccacggtggcccgcgccgttcgggacctgatgaccgac
gtcggcctggccacgttcccgctcaccagcggcagcaaggggctgcatctgtatagcccg
ctggacaagccggtgagcagccgcggcgcggtggtgttggccaaacgtgtggcgcagcaa
ttggaaaagtcgatgccgaaactggtcaccgcgacgatgaccaagagcctgcgagcgggt
aaggttttcctggactggagccagaacaacgcgtcgaagaccaccatcgcgccctattcg
ctgcggggtcgcgagcatccgacagtcgccgcaccgcgcagctgggaggagctcgacgac
aagaagcttcgccatctgcggtacgacgaagtgctgaaaagggtcgagcgcgacggagac
ttgctggcgccgctggacgccgacgcgcggaccccggatcggctgagcaaataccgcagc
atgcgagacccgtcgaaaacgccggaacccgtgcccacctcgaaaccgtctatcggacga
ggtaatacctttgtcattcaggagcaccacgcccgccggctgcactacgacttccgcctc
gaacgcgacggtgtactcgtgtcctgggcggtgccgaagaacctgccggagaccaccgcg
gtcaaccacctggcggttcacaccgaggaccatccgctggagtacggcagcttcgaaggc
ggcatcccgaaaggagaatacggcgccggcgaggtgatcatctgggactccggcacctat
gacgcggagaagttccgagaggatgaagtgattgtcacgctgcatggtcagcggatctcc
gggcgctacgcgctgattcaaaccgacggcgaccagtggctggcgcatcggatgaaagac
caaaaggttttccaattcgatgaactggtcccgatgctcgccacagagggttcggtggcg
aacctgaaagcaccgcaatgggcattcgagggcaagtgggacggttaccggttgctggtc
gacgctgattatggcgccgtacggctgcgttcgcgcaacgggcgtgacgtcaccaaggaa
tatcctcaactgcgttcactggcacgcgatctcggcgatcaccgtgttgttctcgacggc
gaagtcgtcgcgctcgacgcttccggtgttccgcgatttactgaaatgcagaacagggcg
cggtccaccagaatcgagttctgggcattcgacctgctgtatttggacgggcggtcgtta
ttgcgggcgcgctactctgatcggcgccaactgctggaaacgcttgccggcgtgggcggt
gtgaacgttcccgagctactagccggcgacggcgccgaggcgctggactactcacgtaag
caccagtgggagggtgtgatcgccaaaaagcgcgactccacctaccggccgggtcgccgc
tcggcgtcgtggctcaagcacaagtattggaacacccaggaagtcgtcatcggcggatgg
cgcgccggcgagggcgggcgcaccagcgggatcgggtcgttactgatggggatgccgact
gcggacgggctgcatttcgcggggcgggtcggcaccgggttcaccgaacgagacttggcc
gcgctgaagaagacgctcaagccgttgcacaccgacgaatcacccttcgacgcaccactt
cccacaaaggacgccaagggcgtgaccttcgtgaaacctacgctggtcggggaagtccgg
tacagcgagtggacgtctgacggtcggctgcgtcagcccagctggcgtgggctgcggccc
gacaaagaatcgcgcgaggtgatgcgggaatga
DBGET
integrated database retrieval system
