Candidatus Mycobacterium methanotrophicum: M5I08_12985
Help
Entry
M5I08_12985 CDS
T08748
Symbol
dnaE
Name
(GenBank) DNA polymerase III subunit alpha
KO
K02337
DNA polymerase III subunit alpha [EC:
2.7.7.7
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03030
DNA replication
mmeh03430
Mismatch repair
mmeh03440
Homologous recombination
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03030 DNA replication
M5I08_12985 (dnaE)
03430 Mismatch repair
M5I08_12985 (dnaE)
03440 Homologous recombination
M5I08_12985 (dnaE)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmeh03032
]
M5I08_12985 (dnaE)
03400 DNA repair and recombination proteins [BR:
mmeh03400
]
M5I08_12985 (dnaE)
Enzymes [BR:
mmeh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.7 DNA-directed DNA polymerase
M5I08_12985 (dnaE)
DNA replication proteins [BR:
mmeh03032
]
Prokaryotic type
DNA Replication Elongation Factors
Elongation factors (bacterial)
DNA polymerase III holoenzyme
M5I08_12985 (dnaE)
DNA repair and recombination proteins [BR:
mmeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
MMR (mismatch excision repair)
DNA polymerase III holoenzyme
M5I08_12985 (dnaE)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol3_alpha
DNA_pol3_finger
PHP
HHH_6
tRNA_anti-codon
DNA_pol_IIIA_C
DUF7311
Motif
Other DBs
NCBI-ProteinID:
UQX09352
UniProt:
A0ABY4QGI7
LinkDB
All DBs
Position
2481299..2484871
Genome browser
AA seq
1190 aa
AA seq
DB search
MTDPSALRTGARRASFVHLHNHTEYSMLDGAAKIAPMLAEAQRLEMSAIGMTDHGNMFGA
SEFFHAATAAGIKPIIGVEAYVAPGTRFDTRRILWGDPGQKSDDVSGSGSYTHLTMVAEN
VTGLRNLFKLSSLASFEGQLGKWPRMDAELIAEHSAGIIATTGCPSGEVQTRLRLGQHRE
ALESAAKWREIFGAENYFLELMDHGLDIERRVRDGLLEIGRTLNIPPLATNDCHYVTRDA
AHNHEALLCVQTGKTLSDPNRFKFDGDGYYLKSAAEMRAIWDGQVAGACDAALLIAERVS
SYADVWAPRDRMPVFPVPDGHDQASWLRHEVDAGLRRRFGDALPDGYAQRAAYEIEIICD
KGFPSYFLIVADLINYARSVDIRVGPGRGSAAGSLVAYALGITDIDPIPHGLLFERFLNP
ERTSMPDIDIDFDDRRRGEMVRYAADKWGHDRVAQVITFGTIKTKAALKDSARIHYGQPG
FAIADRITKALPPAIMAKDIPLSGITDPSHERYREAAEVRGLIDTDPDVRTIYHTARGLE
GLIRNAGVHACAVIMSSEPLTEAIPLWKRPQDGAVITGWDYPSCEAIGLLKMDFLGLRNL
TIIGDAIENIKANRGIDLDLESVPLDDPATFALLSRGDTLGVFQLDGGPMRDLLRRMQPT
GFEDVVAVIALYRPGPMGMNAHNDYADRKNNRQAIKPIHPELEEPLREILAETYGLIVYQ
EQIMRIAQKVAGYSLARADILRKAMGKKKREVLEKEFEGFSEGMQANGFSAKAIKALWDT
ILPFADYAFNKSHAAGYGMVSYWTAYLKANYPAEYMAGLLTSVGDDKDKAAVYLADCRKL
GITVLPPDVNESGLNFASVATDIRYGLGAVRNVGANVVASLLKTRSAKGKFTDFSDYLNK
VDIAACNKKVTESLIKAGAFDSLKHPRKGLFLVHTDAVDSVLGTKKAEAMGQFDLFGGDP
NDGGAGADAVFTIRVPDEEWDDKHKLALEREMLGLYVSGHPLNGVAHLLATQVDTTIPAI
LDGEIANDTLVKVGGILASVNRRVNKNGMPWASAQLEDLTGGIEVMFFPHTYSAFGADVV
DDAVVLVTAKLAIRDDRIALIANDLVVPDFSNAQANRPLAVSLPTRQCTSEKVSALKQVL
TQHPGTSQVHLRLVSGDRITTLELDASLRVAPSPALMGDLKALLGPGCVG
NT seq
3573 nt
NT seq
+upstream
nt +downstream
nt
atgaccgatccgtctgctcttcgcaccggtgctcgtcgcgcgtcgttcgtgcacctgcat
aaccacaccgagtactcgatgctggacggtgcggcgaagatcgcgccgatgctggccgag
gcgcagcggctggagatgtcggcgatcggaatgaccgaccacggcaacatgttcggcgcc
agcgagttctttcatgcggctacggcggccggcatcaagccgatcatcggcgtcgaggcg
tacgtcgctcccggtacccgttttgacacccggcgcatcctgtggggcgacccggggcag
aagagcgacgacgtgtccggcagtggctcctacacccacttgacgatggtcgccgagaac
gtcaccggtctgcgaaacctgttcaagctgtcgtcgctggcgtctttcgagggccagctg
ggcaagtggccgcggatggacgccgagctgatcgccgagcactcggccggcatcatcgcc
accaccggctgcccctccggcgaggtgcagacccggctgcggctcgggcagcaccgcgag
gcgctcgagtccgccgccaagtggcgggagatcttcggcgcggagaactactttctggag
ttgatggaccacgggctggacatcgaacgccgggtccgcgacgggttgctcgagatcggc
cgcacgctgaacatcccgccgctggccaccaacgactgccactacgtcacccgcgacgcc
gcgcacaaccatgaggcgctgctgtgtgtgcagaccggcaagacgttgtcggatccgaac
cggttcaagttcgacggcgacggctattacttgaagtccgcggccgagatgcgagcgatc
tgggacggccaggtcgccggggcctgtgacgccgccctgctgatcgccgagcgggtgagc
tcctatgccgatgtgtgggcaccacgtgaccggatgccggtgttcccggtgcccgacggg
cacgaccaagcgtcctggctgcgccacgaggtcgacgccggtctgcgccggcggttcggc
gatgctctgcccgacggctacgcgcagcgggccgcctacgagatcgaaatcatctgcgac
aagggttttccgtcgtacttcctgatcgtcgccgacctgatcaactacgcgcgctcggtc
gacatccgcgtcgggccgggccgcggttcggcggccgggtcgctggtggcctatgcgctg
ggcatcaccgacatcgacccgatcccgcacggcctgctgttcgagcgattcctcaatccc
gagcgcacctcgatgcccgacatcgacatcgacttcgacgaccgccgtcgcggcgaaatg
gtgcgctacgccgccgacaagtggggacatgaccgcgttgcccaggtcatcaccttcggc
actatcaaaaccaaagcggcgctgaaggactcggcccgaatccactacgggcagcccggt
tttgcgatcgccgaccggatcaccaaggcgctaccgccggcgatcatggccaaagacatc
ccgttgtcgggcattaccgaccccagccacgagcgctacagggaagccgccgaggttcgc
ggcctaatcgacaccgacccagatgtgcggaccatctaccacaccgcgcgcggcctggag
ggattgatccgtaacgcgggcgtacacgcctgcgcggtgatcatgagcagcgagcctctg
accgaggcgatcccgctgtggaagcggccgcaggacggggccgtcatcaccggctgggat
tacccgtcgtgcgaggccatcggcctgctgaagatggatttcctcggtctgcgcaacctg
acgatcatcggcgacgcgatcgagaacatcaaggccaatcgggggatcgacctcgacctg
gaatccgtgccgctcgacgacccggccaccttcgcgctgctgagccgcggcgacacgttg
ggcgtgttccagctcgacggcgggccgatgcgcgacctgctgcgccgcatgcagcccacc
ggattcgaggacgtcgtcgcagtgatcgcgctgtaccggccgggcccgatgggcatgaac
gcccacaacgactacgccgaccggaagaacaaccgccaggcgatcaagcccattcaccct
gaactcgaggaaccgctgcgcgagatccttgccgagacctacggcctgatcgtgtatcag
gagcagatcatgcgcatcgcgcagaaggtggccggctactcgttggcccgagccgacatt
ctgcgcaaggcgatgggcaagaagaaacgcgaagtcctggagaaggaattcgaaggcttc
tcggaaggcatgcaggccaacggtttctcggccaaggccatcaaagcgttgtgggacacc
atcttgccgttcgccgactatgcgttcaacaagtcgcatgccgccggatacggcatggtg
tcgtactggacggcctatctgaaggccaactatccggccgaatacatggcggggttgctc
acctcggtcggtgacgacaaggacaaagccgctgtctatctggccgattgccgcaaactc
ggcatcaccgtgctgccgccggacgtcaacgagtcgggcttgaacttcgcctcggtcgcc
accgacatccgctacgggctgggcgcggtgcgcaacgtcggcgccaatgtggttgcctcg
ctgttgaaaacccgtagcgcgaagggcaagttcaccgacttctccgactacctcaacaag
gtcgacatcgcggcgtgcaacaagaaggtcaccgaatcgctgatcaaagccggcgcattc
gattcgctgaagcacccccgtaaagggctgttcctggtgcacaccgacgcggtggactcg
gtgctgggcaccaagaaggccgaggcgatggggcagttcgacctgttcggcggcgatccg
aatgatgggggagcaggcgctgacgcggtcttcaccatcagggttcccgacgaggagtgg
gacgacaagcacaaactcgcgctggaacgcgaaatgctgggcttgtacgtgtctgggcat
ccgctcaacggggtggcgcatctgctggcgacccaggtcgacaccacaatcccggcgata
ctcgacggcgaaatcgccaacgacacgctggtgaaggtcggcggcatcttggcgtcggtg
aaccgccgcgtcaacaagaacggaatgccttgggcctcagcgcagctggaagacctcacc
ggcggtatcgaagtgatgttcttcccgcatacctactcggccttcggcgccgacgtcgtc
gacgacgcggtggtgctcgtcaccgcaaagctcgcaatccgagacgaccggattgcgctg
atcgccaatgacctcgtggtgccggacttttccaacgcacaagcgaatcggccgttggcg
gtcagcctgccgacccgacagtgcactagcgagaaggtcagcgcgctcaaacaagtgctg
actcaacaccccggcacgtcacaggtgcatctgcggctggtcagcggggaccggatcacc
acgctcgagttggacgcgtcgctgcgggtggcgccgtccccggcgctgatgggcgatctc
aaggcgctgctcggtcccggttgcgtgggctag
DBGET
integrated database retrieval system
