Candidatus Mycobacterium methanotrophicum: M5I08_13270
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Entry
M5I08_13270 CDS
T08748
Name
(GenBank) RNA helicase
KO
K03727
ATP-dependent RNA helicase HelY [EC:
5.6.2.6
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmeh03019
]
M5I08_13270
Enzymes [BR:
mmeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
M5I08_13270
Messenger RNA biogenesis [BR:
mmeh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
Other RNA degradation factors
Others
M5I08_13270
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
SH3_HelY
DEAD
ResIII
Helicase_C
DEXQc_Suv3
MTR4-like_stalk
HVO_A0261_N
HEAT_EF3_GNC1
WSLR
nSTAND3
Motif
Other DBs
NCBI-ProteinID:
UQX09398
UniProt:
A0ABY4QGA1
LinkDB
All DBs
Position
2536574..2539360
Genome browser
AA seq
928 aa
AA seq
DB search
MTTSPSPAGELARFTAELAFKLDPFQQQACAALENGHGVLVCAPTGAGKTAVGEFAVHLA
LAAGGKCFYTTPLKALSNQKHSDFVARYGKDQIGLLTGDLSVNANAPVVVMTTEVLRNML
YADSPVLRGLSYVVMDEVHFLADRMRGAVWEEVILHLPDDVRLVSLSATVSNAEEFGGWI
QTVRGDTAVVVDDHRPVPLWQHMLVGKRIFDLFDYDADRAGERRQPIVDPNLLRHIAHRR
EADQLSDWRGPRRHGGRGGPGRAGRPGFYRPPSRPDVIAMLDSEGLLPAITFVFSRAGCD
AAVAQCLRSPLRLTTEEGRAQIAEVIDHRCGDLADDDLAVLGYYDWRDGLLRGIAAHHAG
LLPVFRHTVEELFTAGLIKAVFATETLALGINMPARTVVLERLVKFNGEQHLPLTPGEYT
QLTGRAGRRGIDIEGHAVVLWQPGDPSSEPAEVAGLASTRTFPLRSSFAPSYNMTINLVN
RVGPEQAHRLLEQSFAQYQADRSVVSLVRGVERGQRMLDEVAADLGGSDSPVLEYARLRD
QITQHERAHARASRLQRRQAANDALAALRRGDIITITHGRRGGLAVVLEPDRDGDDPRPL
VLSEHRWAGRISSAEYSGAPAPVGSMTLPKRVEHRQPRVRRDLAAALRSAAQELPVSGGL
GQSRGNRTQRRDADPELVSLREQMHRHPIHREPGREAQVRLAQRYLRIERDNAALEKKVA
AATNSLARTFDRIVGLLTERGFIQPTDGDLTVTDDGRLLARIYSESDLLVVECLRTGAWA
GLRDTELAAVISAVLYESRGGDGPGPPRNAEVPTARLRHALHRTRRLSEELRADEHRHRV
TLSREPDDGFVAAIYRWASSADLVAALAAADSEGAGSPLSPGDFVRWCRQVLDLLDQVRN
AAPQPELRATAKRAIDAIRRGVVAVDAR
NT seq
2787 nt
NT seq
+upstream
nt +downstream
nt
atgacgacgtcacctagccccgccggcgaattggcccggttcaccgcggaattggccttt
aaactcgacccctttcagcagcaggcttgtgcggcactggaaaacggccacggtgtgctg
gtgtgcgcgccgaccggagcagggaagaccgccgtcggcgagttcgcggtgcacttggcg
ctcgcggccggcggcaaatgcttctacaccacgccgctgaaagcgctgagcaaccagaag
cacagcgatttcgtggcccgctacggcaaagaccagatcggattgctcaccggcgacctg
tcggtcaacgccaacgcacccgtcgtggtgatgaccaccgaagtgctgcgcaacatgctt
tacgctgattcgcctgtgctgcgaggactttcctatgtggtgatggatgaagtgcacttc
ctcgccgaccggatgcgcggcgcggtgtgggaagaggtcatcctgcatctgcccgacgac
gtgcgcttggtcagcctgtcggcgacggtgagcaatgccgaggagttcggcggctggatc
cagaccgtgcgcggcgacaccgccgtggtcgtcgacgatcaccgcccggtcccgctctgg
cagcacatgctggtcggcaaacgcatcttcgaccttttcgactacgacgccgaccgcgcg
ggtgagcggcgacagccgatcgtcgacccaaaccttctgcgccacatcgcccatcgccgc
gaggccgatcagctctcggactggcgtgggccccgtcggcatgggggaaggggagggccg
ggccgggccggccggccgggtttttaccgaccgccgtcgcggccggacgtgattgccatg
ctcgactccgagggcctgctgccggcaatcactttcgtgttctcccgggccggttgcgac
gccgcggtcgcgcagtgcctgcggtcgccgttgcggctgaccaccgaggagggccgggcg
cagatcgccgaggtgatcgaccatcgctgcggcgatctggcggacgacgacctggccgtg
ctcggctactacgactggcgggacgggctgctgcgcggcatcgccgcccaccacgccgga
ctgttgccggtgttccggcacaccgtcgaggagctgttcaccgccgggctgatcaaagcc
gtcttcgccaccgaaacgctggcgctgggcatcaacatgccggcccgcacggtggtgctg
gaacggctggtgaagttcaacggcgagcagcacctcccgctgacgccgggcgagtacacc
cagctcaccgggcgggccggcaggcggggcatcgacatcgaaggccacgccgtggtgctc
tggcaacccggcgatcccagcagcgaaccggccgaagtcgcgggcctggcctccacccgc
acctttccgctgcgcagctcgttcgcgccgtcgtacaacatgacgatcaacctggtgaac
cgggtcggccccgagcaggcccaccggctgctggagcagtcgttcgcccagtatcaggcc
gatcggtcagtggtaagcctggtccgcggcgtcgagcgcgggcagcggatgctcgacgag
gtcgcagccgacctcggtggaagcgattcgccggtcctcgagtacgcgcggctgcgggac
cagatcacccaacacgagcgggcgcacgcccgcgcgtctcgattgcaacgccggcaggcg
gccaatgacgcgctggcggcgctgcgccgtggtgacatcatcacgatcacgcacggccgc
cgaggcggcttggcggtcgtgctggagcccgatcgggacggcgacgacccccggccgttg
gtgctgagcgaacaccgctgggccggccggatttcgtcggccgagtattccggcgcgcct
gcgcccgtgggctcgatgacgttgcccaagcgggtcgaacaccggcagccgcgggttcgc
cgcgatctggcggcggcgctgcggtcggccgcgcaggaattaccggtttcgggtggcctc
ggacaatccaggggcaaccgtacgcagcggcgcgatgccgaccccgagctggtgtcgcta
cgtgagcagatgcatcgtcacccaatccaccgcgaacccggtcgggaggcccaagtgcgg
ttggcgcagcggtatctacgcatcgaacgcgacaatgctgcgctggaaaagaaggtggcc
gccgccaccaattcgttggcgcgtaccttcgaccggatcgtcgggcttctcaccgagcgc
gggttcatccagccgaccgacggtgacctgacagtaaccgacgacgggcggctgctggcc
cggatttacagtgagagcgaccttttggtggttgaatgcctgcgcaccggcgcgtgggcc
ggtttgcgcgacacggagttggccgccgtgatctcggcggtgctctatgagtcgcggggc
ggagatggcccggggccgccgcgaaacgcggaggtgcccaccgcgcggttgcgccacgcg
ctgcaccgcacgcggcgactgtcggaggagttacgcgccgacgagcaccggcaccgcgtc
acgctgagtcgtgagcccgacgacggcttcgtcgcggccatctaccgctgggccagcagc
gctgacctggtcgccgccttggccgccgctgactccgagggcgcgggttcacccctgtcg
cccggggatttcgtgcgctggtgtcggcaggtgcttgatttgctggaccaggttcgcaac
gccgctccccaacccgagctgcgggcgactgccaaacgcgcgatcgacgccattcggcgc
ggcgtcgtcgcagttgacgcccggtag
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