Candidatus Mycobacterium methanotrophicum: M5I08_18240
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Entry
M5I08_18240 CDS
T08748
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mmeh03016
]
M5I08_18240
Enzymes [BR:
mmeh01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
M5I08_18240
Transfer RNA biogenesis [BR:
mmeh03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
M5I08_18240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
DNA_pol_A_exoN
HRDC
Motif
Other DBs
NCBI-ProteinID:
UQX10117
LinkDB
All DBs
Position
3512164..3513423
Genome browser
AA seq
419 aa
AA seq
DB search
MAYQPPQAADDRPEGAEPGVTPLLAPADGVPDLSTSAAEIAAAAELLADGHGAFAVDAER
ASGFRYSNRAYLIQIRRARAGTVLIDPVSHGGDPLTVLRPVAEVLAQDEWILHAADQDLP
CLAEVGMRPPALYDTELAGRLAGFDRVNLAAEAQRLLGVGLAKGHGAADWSARPLPAAWL
NYAALDVEVLIELRDAIAGVLAEQGKTGWAAEEFDYLRSMGPAAPPTRRERWRRTSGIHK
VRSQRGLAAVRELWTVRDEIAQRRDIAPGRILPDSAIIDAANADPKTRDELIALPIFGGP
KQRRNAATWLAALKAARQAPAPPEEAEPPNGPPAPARWLKRRPEAAARLDAARTALRKLS
EQVSVPTENLVSPDLVRRLCWDWESAQDPVAATDECLAAGQARRWQRALAVPVLAEALA
NT seq
1260 nt
NT seq
+upstream
nt +downstream
nt
atggcttaccagccgcctcaagcggcggacgaccggcccgagggcgccgaaccaggcgtc
acgccgctgcttgcgcccgccgacggggtgcccgacctgtcgacgagcgccgccgagatt
gccgccgccgcagaactgctggccgacggccatggcgcgttcgcggtcgatgccgagcgg
gcctcagggtttcgttactccaaccgcgcttacctgattcagattcgccgggctcgcgcc
ggcactgttctcatcgatccggtcagccacggtggcgacccgctgaccgtgctgcggccc
gtcgccgaggtgctcgcacaggacgagtggattctgcatgcggccgatcaggacctgccc
tgcttggccgaggtgggcatgcggcccccggcgctgtatgacaccgagctggcggggcgg
ttggccggtttcgaccgagtcaacctggcggccgaggcgcaacggctgctcggggtgggc
ctggccaaaggtcacggcgccgcggactggtccgcgcgtccgctgccggcggcgtggctg
aactacgcggccctggacgtcgaagtcctcatcgaactacgcgacgcgatcgccggtgta
cttgctgagcagggcaaaaccggttgggccgcagaggaattcgattacctgcgaagcatg
ggtccggcggcgccgccgacccgccgggagcgctggcgtcgcacttcgggtatccataag
gtgcgcagccagcgcggcctggctgcggttcgtgaattgtggaccgtgcgagacgaaatc
gcgcaacgccgcgatatcgccccggggcgcatcttgcccgactcggcgatcatcgacgcc
gccaacgccgacccgaagacccgcgacgagttgatcgcgttgccgatattcggcggcccc
aagcaacggcgtaacgccgcgacctggttggcggcgctgaaggcggcgcggcaagccccc
gctcctccagaggaggccgaaccacccaacgggccacccgcgccggcacgctggctcaag
cgcagaccggaggccgcggcgcgactggacgccgcccgcaccgcgctgcgcaaactctcc
gagcaagtctcggtgccgaccgagaacctggtttcgcccgacctggtgcgacggctgtgc
tgggactgggagagcgcccaggatccggtggcggcgaccgacgagtgcctggccgccgga
caggcccgtcgttggcaacgtgcgctggcggtgccggtcctggccgaagcgttggcttaa
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