Candidatus Mycobacterium methanotrophicum: M5I08_18605
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Entry
M5I08_18605 CDS
T08748
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
M5I08_18605
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmeh03019
]
M5I08_18605
Messenger RNA biogenesis [BR:
mmeh03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
M5I08_18605
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
RMMBL
Lactamase_B_2
Lactamase_B
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
UQX10178
UniProt:
A0ABY4QIL1
LinkDB
All DBs
Position
complement(3582743..3584419)
Genome browser
AA seq
558 aa
AA seq
DB search
MDVDLRPPGPLTAGGLRITALGGISEIGRNMTVFEHLGRLLIIDCGVMFPTHDEPGVDLI
LPDLRHVEDRLDDVEALVLTHAHEDHIGAIPFLLRLRPDIPVVGSKFTLALVAAKCREHR
LKPVLIQVAEGQRSTHGVFECEYFAVNHSIPDALAIAVRTGAGTVLHTGDIKLDQLPLDG
RPTDLPGMSRLGDDGVDLFLCDSTNAEIPGVGPSESEVGPTLHRLIRSANGRVIVACFAS
NVDRVQQIIDAAVALGRRVSFVGRSMVRNMGIARELGFLRVADSDLVDIGAAEMTAPEQI
VLITTGTQGEPMSALSRMSRGEHRSITLTAEDLIVLSSSLIPGNEETVYGVIDALAKLGA
RIVTNQRVRVHVSGHAYAGELLFLYNGVRPRNVMPVHGTWRMLRANAKLAASAGVPEDSI
VLAENGVSVDLVAGKVGIAGAVPVGKMFVDGLITGDVGDITLGERLILSSGFIAVTVVVR
RGTGRPAAAAHLHSRGFSEDPKALEPAVRKVEAELASLAAENVTDPIRIAQAVRRTVGKW
VGETYRRQPMIVPTVIET
NT seq
1677 nt
NT seq
+upstream
nt +downstream
nt
gtggacgtagaccttcggccgccgggtccgctgaccgctggcggtctgcggatcaccgcg
ttgggcgggatcagcgaaatcggccgaaacatgacggttttcgagcatctgggtcggttg
ttgatcatcgattgcggcgtgatgttccccacccacgacgagcctggcgtcgacctgatc
ctgcccgatctgcgtcatgtcgaagaccgtctcgacgacgtcgaagcgctggtgctgacc
cacgcccacgaggaccacatcggcgcgattccgttcctgctcaggctgcgtcccgacatc
ccggtcgtcggctcgaagttcaccctggccctggtcgccgcgaaatgccgtgagcaccgg
ctgaaaccggtgctgatccaagtggcagagggacagcgcagcacccacggggtgttcgaa
tgcgagtatttcgccgtcaaccactccattcccgacgcgctggccatcgcggtgcgcacc
ggcgcgggcacagtcctgcacaccggtgacatcaaactcgaccagctgcctcttgacgga
cgccccactgacctgcccggcatgtcgcggctcggcgacgacggcgtggacctgtttctg
tgcgactcgaccaacgccgagattcccggtgtcggaccgtcggaaagtgaagtcgggcct
accctgcaccggctgatccgcagtgctaacggacgcgtcatcgtggcgtgttttgcctcc
aatgtggatcgcgtgcaacagatcatcgacgccgctgtggcgttgggccggcgggtctcg
ttcgtcgggcggtcgatggtgcgcaacatgggtatcgcgcgggaattgggttttttgcgg
gtggccgattccgacctggtcgacatcggcgccgcggagatgacggcgcccgagcagatt
gtgctgattaccacgggaactcagggtgagccgatgtcggcgctgtcgcggatgtctcgc
ggtgagcatcgcagcatcacgctcaccgccgaagacctgatcgttctctcgtcgtcgctg
atcccgggcaacgaggaaactgtctacggtgtcatcgacgcgctggccaaactcggagcc
cgcatcgtcaccaatcaacgggtccgcgtgcatgtttcaggccacgcctatgcgggcgag
ctgctgttcctgtacaacggggtgcgaccccgcaacgtcatgccggtgcacggcacctgg
cgaatgctgcgggcgaacgccaaacttgccgccagcgcgggagtgccagaagattcgatt
gtcttggcggagaacggggtcagcgtagacctggtggccggaaaggtcggcatcgccggt
gccgttccggttggcaagatgttcgtcgacgggcttatcaccggtgatgtcggcgatatc
acgctgggcgaacggctcattctgtcatcgggtttcatcgcggtgacagtggtcgtgcgc
cgtgggaccgggcgcccggccgccgcggcgcatctgcactcgcgcggcttctccgaagat
cccaaggcattggagccggccgtccgcaaggtcgaggccgagctggcatcgttggcggca
gaaaacgtcaccgacccgatccggatcgcgcaagcggtccgccgcacggtcggtaagtgg
gtgggcgagacctaccgtcgccaaccgatgatcgtgccaaccgtcatcgaaacctaa
DBGET
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