Candidatus Mycobacterium methanotrophicum: M5I08_21005
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Entry
M5I08_21005 CDS
T08748
Name
(GenBank) DNA-directed RNA polymerase subunit alpha
KO
K03040
DNA-directed RNA polymerase subunit alpha [EC:
2.7.7.6
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Pathway
mmeh03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
M5I08_21005
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmeh03021
]
M5I08_21005
03400 DNA repair and recombination proteins [BR:
mmeh03400
]
M5I08_21005
Enzymes [BR:
mmeh01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
M5I08_21005
Transcription machinery [BR:
mmeh03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
M5I08_21005
DNA repair and recombination proteins [BR:
mmeh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
M5I08_21005
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_A_bac
RNA_pol_A_CTD
RNA_pol_L
SAM_EPH
Motif
Other DBs
NCBI-ProteinID:
UQX10514
LinkDB
All DBs
Position
complement(4016140..4017183)
Genome browser
AA seq
347 aa
AA seq
DB search
MLISQRPTLSEEVINDNRSQFVIEPLEPGFGYTLGNSLRRTLLSSIPGSAVTSIRIDGVL
HEFTTVPGVKEDVTDIILNLKSLVVSSEEDEPVTMYLRKQGPGEVTAGDIVPPAGVIVHN
PEMRIATLNDKGKLEIELVVERGRGYVPAVQNKASGAEIGRIPVDSIYSPVLKVTYKVDA
TRVEQRTDFDKLILDVETKSSIGPRDALASAGKTLVELFGLARELNVEAEGIEIGPSPAE
ADHIASFALPIDDLDLTVRSYNCLKREGVHTVGELVSRTESDLLDIRNFGQKSIDEVKVK
LHQLGLSLKDSPASFDPSQIAGYDVATGTWSGEGAYDDQDYAETEQL
NT seq
1044 nt
NT seq
+upstream
nt +downstream
nt
atgctgatctcacagcgaccgactctgtccgaagaggtcatcaacgacaaccgttcgcag
ttcgtcatcgagccgctggagccgggattcggctacacgcttggtaactcgctgcgccgc
acgctgctgtcgtcgatccccggctcggccgtcaccagcatccgcatcgacggcgtgctg
cacgagttcaccaccgtgcccggcgtcaaggaagacgtcaccgacatcatcttgaacctc
aagagcctggtggtgtcctcggaagaagacgagccggtgacgatgtatctgcgcaagcag
ggcccgggcgaggtcaccgctggtgacatcgtgccgccggccggtgtcatcgtgcacaac
cccgagatgcgcatcgcgacgctgaacgacaaaggcaagctcgagatcgagctggtcgtg
gagcgtggccgcggctacgtcccggccgtgcagaacaaggcgtcgggcgccgaaatcggc
cgtatccccgtcgattccatttactcgccggtgctcaaggtgacctacaaggtggacgcc
acccgtgtcgagcagcgcaccgacttcgacaagttgatcctcgacgtcgaaaccaagagc
tcgatcggtccgcgtgacgcgttggcgtcggcgggtaagaccctggtcgaattgttcggt
ctggcacgcgaactcaacgtcgaggccgagggcatcgagatcgggccgtcgccggccgag
gccgatcacatcgcgtcgttcgcgctgccgatcgacgacctggatctgaccgtgcgttcg
tacaactgcctcaagcgcgagggtgtgcacaccgtcggcgagctggtgtcgcgcaccgag
tccgacctgctcgacatccgcaacttcgggcagaagtccatcgacgaggtgaaggtcaag
ctgcaccagctgggtttgtcgctgaaggacagcccggccagcttcgacccgtcgcagatc
gccggctacgacgtcgccaccggcacgtggtccggcgagggcgcctacgacgaccaggac
tacgccgaaaccgaacagctctaa
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