Candidatus Mycobacterium methanotrophicum: M5I08_21900
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Entry
M5I08_21900 CDS
T08748
Symbol
topA
Name
(GenBank) type I DNA topoisomerase
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
mmeh
Candidatus Mycobacterium methanotrophicum
Brite
KEGG Orthology (KO) [BR:
mmeh00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
mmeh03032
]
M5I08_21900 (topA)
03400 DNA repair and recombination proteins [BR:
mmeh03400
]
M5I08_21900 (topA)
Enzymes [BR:
mmeh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
M5I08_21900 (topA)
DNA replication proteins [BR:
mmeh03032
]
Prokaryotic type
DNA Topoisomerases
M5I08_21900 (topA)
DNA repair and recombination proteins [BR:
mmeh03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
M5I08_21900 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Toprim_C_rpt
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
UQX10639
LinkDB
All DBs
Position
complement(4189574..4192390)
Genome browser
AA seq
938 aa
AA seq
DB search
MAEGDRSGRDGGTTRRLVIVESPTKARKLAGYLGSSYIVESSRGHIRDLPRAAADVPAKF
KSEPWARLGVNVDADFEPLYIISPEKKSTVSELKGLLKDVDELYLATDGDREGEAIAWHL
LDTLKPNMPVKRMVFHEITEPAIRAAAEHPRDLDIDLVDAQETRRILDRLYGYEVSPVLW
KKVAPKLSAGRVQSVATRIIVQRERDRMAFRSASYWDIVAQLDASVSDPQASPPTFTARL
AGVDGLRVASGRDFDSLGRLRKGSASSQEVVILDEASATELAGGLRGAQLSVASAEEKPY
TRRPYAPFMTSTLQQEAGRKLRFSSERTMSIAQRLYENGYITYMRTDSTTLSESAINAAR
TQARQLYGEEYVSASPRQYTRKVKNAQEAHEAIRPAGEIFATPDAVRRELDGDEFRLYEL
IWQRTVASQMADARGTTLSLRIAGRSGGSQPPRDVVFSASGRTITFAGFLKAYVETVDEL
AGGEADDAERRLPRLTEGQRLEALELTPDGHSTNPPARYTEASLIKALEELGIGRPSTYS
SIIKTIQDRGYVYKKGSALVPSWVAFAVTGLLEQHFGRLVDYGFTAAMEDELDAIAAGQE
QRTNWLNNFYFGGDHGVPDSVARSGGLKQLVGVNLEGIDAREVNSIKVFDDSQGRTVYVR
VGKNGPYLERMVLGDDGELKPQRANLNDTLTPDELTLEVAEQFFATPQEGRTLGVDPQTG
HEIVAKDGRYGPYVTEILPDPTDNGPDATGDQAAKKRKKPTGPKPRTGSLLRSMDLQTVT
LEDALKLLSLPRVVGVDPDSGEQITAQNGRYGPYLKRGNDSRSLATEDQIFDITPEEALK
LYAEPKRRGRQAAAAAPLRELGSDPVSDKPMVIKDGRFGPYVTDGETNASLRKGDDVLSI
TDERAAELLADRRARGPAKRTPKNPTRKRPAKKAAKRN
NT seq
2817 nt
NT seq
+upstream
nt +downstream
nt
gtggctgagggcgaccgtagcggccgcgacggtggaaccacgcgacgactcgtcatcgtc
gagtcgccgacgaaggcgcgcaaactggccggctacctgggctccagctatatcgtcgag
tcctcccgaggtcacatccgcgacctgccccgggcggcggccgacgtgcccgcaaagttc
aaatccgagccgtgggccaggctcggagtcaacgtcgatgccgacttcgagccgctctac
atcatcagcccggagaagaagagcaccgtcagcgagttgaagggcctgctgaaagacgtc
gacgagctctacctggccacggatggcgaccgcgagggcgaagcgatcgcctggcacctg
ctggacaccctcaagccgaatatgccggtcaagcggatggtctttcacgagatcaccgaa
ccggctatccgtgcggccgccgaacatccccgcgacctggacatcgacctggtcgacgcc
caggaaacccggcgcatcctggaccggctgtacggctacgaggtcagtccggtgctgtgg
aagaaagtcgcgcccaagctgtcggcgggccgggtccagtcggtggccacccggatcatc
gtccagcgtgaacgcgaccgtatggcgttccgcagcgcgtcgtactgggacatcgtcgcc
cagctggacgccagcgtctccgacccgcaggcctccccgcccaccttcaccgcccgcctg
gcgggcgtcgacgggctgcgggttgccagcgggcgcgatttcgactcgctgggccggctg
cgcaagggctcggcctcgtcgcaggaggtcgtgatcctggacgaggccagcgcgaccgag
ctggccggaggattgcggggcgcccagttgtcggtggcgtcggcggaggagaagccctac
acccggcgtccgtacgcgccgttcatgacgtcgacgctgcagcaggaagccggccgtaag
ctgcggttctcctccgagcgcacgatgagcatcgcccagcgcctctacgagaacggctac
atcacttatatgcggaccgactcgaccacgctgtcggagtcggcgatcaacgcggcgcgc
acccaggcgcggcaactctacggcgaagagtacgtctccgcctccccgcgccagtacacc
cgcaaggtgaagaacgcccaggaggcgcacgaggcgatccggcccgccggtgagatattc
gcgactcccgacgcggtacgtcgcgagctcgacggcgatgaatttcgactctatgagctg
atctggcagcgcacagtggcctctcagatggccgacgcgcgcggcaccacgctgagcctg
cggatcgccggcaggtcgggagggtcgcagcccccaagagatgtggtgttctccgcgtcc
gggcgcaccatcacgtttgccggtttcctgaaggcctacgtcgaaacggtcgacgagctg
gccggcggcgaggccgacgacgccgagcgccggctgccgcgcttgaccgaggggcagcgg
ctggaggccctcgagctcacccctgacggccactccaccaacccgccggcgcgctacacc
gaagcctcgctgatcaaggctctcgaggagctgggcatcggccgtccgtcgacgtattcg
tcgatcatcaagaccatccaggaccgcggttacgtgtacaaaaagggcagcgctctagtg
ccctcgtgggtcgcgttcgccgtcaccggtctactggaacagcatttcggccggctggtc
gactacggctttaccgcggccatggaagacgagctcgacgcgatcgccgccggccaggag
caacgcaccaactggctcaacaacttctacttcggcggtgaccacggcgtgccagattca
gtggcgcgctccggcgggctgaaacaactggtcggggtcaacctcgaagggatcgatgct
cgagaagtcaactccatcaaggtctttgacgattcgcaaggacgcaccgtttacgtgcgg
gtggggaagaacgggccctacttggaacggatggtgctcggcgacgacggcgagttgaaa
ccgcagcgggccaacctcaacgacacgctgactcccgacgagctgactttggaagtggcc
gaacagtttttcgccacaccccaagagggtcggacgctaggagtggatccgcagaccggt
cacgagatcgtcgccaaagacggtcgctacgggccatatgtcaccgagatccttccggac
ccaacggataacggccccgacgccaccggtgatcaggctgccaagaagcgcaaaaaaccc
accggtcccaagccgcgtacgggttcgctgttgcgcagcatggatttacaaaccgtcacg
cttgaggacgcactgaaacttctgtcgctgccccgcgtcgtaggcgttgatccagactcg
ggtgagcagatcaccgcacagaacgggcgctatggcccatatttgaagcgcggcaacgat
tctcgctcgctggccaccgaagaccagatattcgacatcacccccgaggaagcgttgaag
ctctacgcggagccgaaacgtcgtggcaggcaggctgccgcagctgcaccgctgcgcgag
ctgggcagcgacccagtgtcggacaagccgatggtgatcaaagacggtcgattcggcccg
tatgtcaccgacggcgagaccaacgccagtctgcgcaaaggcgacgacgtgctgtcgatc
accgacgagcgtgccgcggaattgctggccgaccggcgcgcccggggcccggcgaagcgg
acgcccaagaacccgacgcgcaagaggccggcgaagaaagcagccaaacgtaactag
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