Mesorhizobium mediterraneum: LRP31_04240
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Entry
LRP31_04240 CDS
T09205
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmei
Mesorhizobium mediterraneum
Pathway
mmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRP31_04240
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmei03019
]
LRP31_04240
03009 Ribosome biogenesis [BR:
mmei03009
]
LRP31_04240
Enzymes [BR:
mmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRP31_04240
Messenger RNA biogenesis [BR:
mmei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRP31_04240
Ribosome biogenesis [BR:
mmei03009
]
Prokaryotic type
rRNA helicases
LRP31_04240
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
CMS1
WHIM1
AAA_22
Cas3-like_C_2
Motif
Other DBs
NCBI-ProteinID:
WIW54460
LinkDB
All DBs
Position
903217..905079
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AA seq
620 aa
AA seq
DB search
MSNFEAIVPALAKALENRGYVELTPVQKAVLELGQADALVSAQTGSGKTVAFGLALAPTL
LDGAERFSHAAAPLALAVAPTRELALQVTRELEWLYELTGATVASCVGGMDMRTERRTLE
RGAHIVVGTPGRLRDHITRHSLDMSALKAVVLDEADEMLDLGFREDLEFILDAAPAERRT
LMFSATVPRSIATLAKGYQRDAVRISASGEEKQHLDIEYRALSVAQADRENAIINVLRYY
EAKNALVFCNTRAAVNHLTARFNNRNFSVVALSGELSQNERSHALQAMRDGRAKVCIATD
VAARGIDLPNLELVIHADLPTNPETLLHRSGRTGRAGRKGVSALIVPNNARRRTERLLQS
AGLAATWASPPSADDVLRRDDERILADPVLSEPVTDDERGFVSTLLDQRGAELVAAAFVR
LCRSSRSAPEDLLDVAPFTPSGDGPSGDKSVRRDEAPSRRDDFGDSVWFSLSVGRRQNAE
PRWLIPMLCRTGGISKREIGAIKMQPEETFVQIAADWADRFLQAIGPDRKLQNNISVRRL
DGTPDLSRAGYQEPRPDKKPHRGKRTFDQNAPKPKFEKRAAPAGQRDAAFEAKPWAGKAG
KPKFEKTGPAKNKKSKKRPA
NT seq
1863 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatttcgaagctattgtccccgcgctggcaaaggcgctggaaaaccgcggctat
gtcgagctgacgccggtgcagaaggcggttctcgagctcgggcaggccgatgcgctggtt
tcggcgcagaccggctccggcaagaccgtcgccttcgggctggctctggcgccgaccctt
ctcgatggcgccgaacgcttttcccacgccgccgcaccgctggcgctggccgtggcgccg
acgcgcgaactggccctgcaggtaacgcgcgagctggaatggctctacgaactgaccggc
gcgaccgtggcatcctgcgtcggcggcatggacatgcgcaccgaacggcgcacgctggaa
cgcggcgcccacatcgtcgtcggcacgcctggccggctgcgcgaccacatcactcggcat
tcgctcgacatgtcggcgctcaaggccgtggtgctcgacgaggccgacgagatgctcgat
ctcggctttcgcgaggatctcgaattcatcctcgacgctgccccggccgagcgccgcaca
ctgatgttttccgccaccgtgccgcgctccatcgccacgctggccaaaggctaccagcgc
gacgcggtacgcatctcggcctccggcgaggaaaagcagcatctcgacatcgaataccgg
gcgctgagcgtagcccaggccgaccgggaaaacgccatcatcaacgtgctgcgctattac
gaggcgaagaacgcactggtgttctgcaacacgcgcgctgccgtcaatcacctgaccgcg
cgcttcaacaaccgcaacttttccgtcgtggcgctttcgggcgagctgagccagaacgag
cgcagccacgcgctgcaggcgatgcgcgacggccgcgcaaaagtctgcatcgccaccgac
gtggcggcgcgcggcatcgacctgcccaacctcgaactggtgatccacgccgacctgccg
accaatccggagacgcttctgcaccgaagcgggcggacgggccgggcgggacgcaaaggc
gtcagcgcgctgatcgtgcccaacaatgcccgcaggcgcaccgaacgcctgctgcaaagc
gccggccttgcggcgacatgggcaagcccgccttcggccgacgacgtcctgcgccgtgac
gacgagcgcatcctcgccgacccggtcttgagcgaacctgtgacggacgatgagcgcggc
ttcgtcagcacgcttctcgaccaacgtggcgccgaactggtggcggcggccttcgtgcgt
ctctgccgctccagccgatcggcgcccgaggatctcttagacgtcgctccgttcacgccg
tcgggcgacgggccctctggcgataaatccgtccgtcgcgacgaggcgccaagccgccgc
gacgatttcggcgacagtgtctggttctcgctgtcggtggggcgccggcagaatgccgag
ccgcgctggctgatcccgatgctgtgccggacaggcggcatcagcaagcgcgagatcggc
gccatcaagatgcaaccggaggaaaccttcgtgcagatcgcggccgactgggccgaccgg
tttctccaggcgatcggcccggaccgcaagctgcagaacaacatcagcgtgaggcggctg
gacggcactcccgacctgtcgcgggccggctatcaggaaccacggccggacaagaaaccg
catcgtggcaagcggacgttcgaccagaacgcgccgaagccgaaattcgagaagcgcgcg
gcgccggcgggacagcgcgacgccgcgttcgaggcaaagccctgggccggtaaggcaggc
aaaccgaaattcgaaaagaccggacccgccaagaacaagaagtcgaagaagcggccggct
tag
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