Mesorhizobium mediterraneum: LRP31_17795
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Entry
LRP31_17795 CDS
T09205
Name
(GenBank) ribonuclease J
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
mmei
Mesorhizobium mediterraneum
Pathway
mmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRP31_17795
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmei03019
]
LRP31_17795
Messenger RNA biogenesis [BR:
mmei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRP31_17795
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNase_J_b_CASP
RNase_J_C
Lactamase_B_2
Lactamase_B
RMMBL
Anti-Pycsar_Apyc1
Motif
Other DBs
NCBI-ProteinID:
WIW50956
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Position
3662780..3664450
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AA seq
556 aa
AA seq
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MAKAENAELVFVPLGGVGEIGMNFALYGYGPANAREWIVVDVGVTFPDASLPGVDLVLPD
TRFIEENIANLRGIVITHAHEDHYGALLDTWPKLKAPVWMTPFGAGLLEAKRQGEQGAPK
IPLTIYRAGEKFTIGPFEIEAIPVAHSIPEPMSLAITSPAGTVIHTGDWKIDPAPTIGPM
TDEARFRAYGDKGVLALICDSTNALREGESPSEVAVGEGLRGVIQSAKGRVAVTTFSSNV
GRIVSIAKAARDAGRQCLVLGRSLKRVIDVAGELGYMDGLPEFIAEEDFGFIPRENLVII
CTGSQGEPLAALAKLSRDEMKSVSLTAGDTVVFSSRTIPGNEKGILEIKNRLIDLGIKII
EDGDALVHVSGHPRRSELRKMYEWVRPQIGVPVHGEAAHLVAQGSLMSVSGISQVAQVRD
GDMLRLYPGAATIIDQVPFGRIYKDGRLIGTDQAMGIRDRRKLSFAGHVAVNVVLDDKYE
LAGDPDLVAIGVAEADARGESLEDLMIDAAIGAVDSIPRQRRKDLDLVQEAVRRAVRGAA
NEAWGKKPLVTVFVTR
NT seq
1671 nt
NT seq
+upstream
nt +downstream
nt
atggcgaaagctgaaaacgccgaactcgtcttcgtgccgctcggcggcgtcggcgagatc
ggcatgaacttcgccctctatggctacggcccggccaatgcgcgcgaatggattgtcgtc
gatgtcggcgtcacctttcccgatgccagcctgcctggcgtcgacctggtgctgcccgac
acgcgcttcatcgaggagaacatcgccaatctgcgcggcatcgtcatcacgcacgcgcat
gaggaccattacggcgcgctgctcgacacatggccgaagctcaaggcgccggtctggatg
acgccgttcggcgccggattgctggaagccaagcggcaaggcgagcagggcgcaccgaag
atcccgttgacgatctaccgggccggcgaaaaattcaccatcggcccgttcgagatcgag
gcgattcccgtcgcgcattctattcctgaaccgatgtcgctggcgatcacctcgccggcc
ggcaccgtcatccacaccggcgactggaagatcgatccggcgccgacgatcggaccgatg
accgacgaggcccgcttccgcgcctatggcgacaagggcgtgctggcgctgatctgcgat
tccaccaatgcgctgcgggaaggggagtcgccatcggaagtggcggtaggtgagggcctc
aggggtgtcatccagagcgccaagggccgcgtcgcggtcaccactttttcctccaatgtc
gggcgcatcgtctccattgccaaggcggctagggatgccggccgccagtgcctggtgctt
ggccgctcgctgaaacgcgtcatcgatgttgctggtgagctcggctacatggacgggctg
cccgaattcatcgccgaggaggattttggcttcatcccgcgtgaaaacctcgtcatcatc
tgcaccggcagccagggcgagccgcttgcggcattggcgaaactgtcgcgcgacgagatg
aaatcagtgtcgctgacagcaggcgacacggtggtgttttcctcgcgcaccattcccggc
aacgagaaggggattctcgagatcaagaaccgcctgatcgatctcggcatcaagatcatc
gaggacggcgatgcgctggtgcatgtctccggccatccacgccgcagcgagttgcgcaag
atgtatgaatgggttcggccgcagatcggcgtccccgtgcatggcgaggcggcgcatctg
gtggcgcaggggtcgctgatgtcggtgtccggcatcagccaggtggcgcaggtgcgcgac
ggcgacatgctgcggctctatccgggtgctgccacgatcatcgaccaggtgccgttcggc
cgcatctacaaggacggcaggctgatcggcaccgaccaggcaatgggcatccgcgaccgg
cgcaagctgtcctttgccggccatgtcgcggtcaatgtcgtgctcgacgacaaatatgag
ctcgccggcgatcccgatctggtcgccatcggcgtcgccgaggccgatgcgcgcggcgag
agcctggaagacctgatgatcgatgcggcaatcggcgccgtggactccatcccccgtcag
cgccgaaaagacctcgacctcgtgcaggaggcggtgcgccgcgccgtccgcggcgccgcc
aacgaagcctggggcaagaagccgctggtgacagtgttcgtcacgcggtga
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