Mesorhizobium mediterraneum: LRP31_19605
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Entry
LRP31_19605 CDS
T09205
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mmei
Mesorhizobium mediterraneum
Pathway
mmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRP31_19605 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmei03019
]
LRP31_19605 (rnr)
03016 Transfer RNA biogenesis [BR:
mmei03016
]
LRP31_19605 (rnr)
Enzymes [BR:
mmei01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
LRP31_19605 (rnr)
Messenger RNA biogenesis [BR:
mmei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
LRP31_19605 (rnr)
Transfer RNA biogenesis [BR:
mmei03016
]
Prokaryotic type
tRNA degradation factors
LRP31_19605 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
S1
RNase_II_C_S1
Motif
Other DBs
NCBI-ProteinID:
WIW56836
LinkDB
All DBs
Position
complement(4038252..4040522)
Genome browser
AA seq
756 aa
AA seq
DB search
MRTADTRAKVRDNYRPSRDEILRYIAENPDRSGKRDIAKAFALRGEDRIWLKDILRDLQD
EGLLTKERNRLARVGALPHVAVLDIFGRDADGVLLAHPTEAVGNGEPPVIAIRVSRGGGG
PTPGIGDRVLAKTFPTDDATGPAYTGRVMKIFEKRTDAVLGVFRVLQDGTFRIEPVERRQ
PELVVDKEFQNGAKNGDLVEVEPARASRYGLPRAKVLAVLGSLTSEKAVSMIAIHAHDIP
HIFPADVIAEAEAVKPATLADREDWRDLPLVTIDPADAKDHDDAVFATPDTDEKNPGGVV
VTVAIADVAAYIRYGTALDREALKRGNSVYFPDRVVPMLPERISNDLCSLREGQDRPALA
VRMTFAADGRKLRHSFHRIMMKSAAKLAYPQAQAAIDGVRDDKTGPILDTVLKPLWDAYA
VVKRGRDTRQPLELDLPERKILLKEDGTVDRVVVPERLDAHKLIEEFMIQANVAAAETLE
AKRQALVYRIHDAPSLAKQESLREFLQTLGLSLARGAQMRPNQFNGILDRVRGADHEGLV
NEVVLRTQMQAEYSPSNIGHFGLNLKRYAHFTSPIRRYADLIVHRGLIAALGFGAGGLTQ
DEAERLEEVSALISATERRAMAAERDTVDRLIAAYLAERVDERFDARISGVTKSGLFVQL
PQYGADGFIPVSSLDGDYYIYDETARSLFGERTGKGYQLADRVEVRLIEVAPMAGAMRFE
MLTDPKPLPGSKPSFHKTKGRARASQSRPGSRGRRR
NT seq
2271 nt
NT seq
+upstream
nt +downstream
nt
ctgcgcaccgccgacacgagggccaaggtcagggataactaccggccgtcccgtgacgag
atcctgcgctacatcgccgaaaatccggatcgctccggcaaacgcgacatcgccaaggcg
tttgcgctgcgcggcgaggaccgtatctggctgaaggacattttgcgcgacctgcaggat
gagggcctgctgaccaaggagcgcaatcggctggcccgtgtcggcgccctgccccatgtc
gccgtgctcgacatctttggccgcgacgccgacggcgtgctgctggcgcacccgaccgaa
gccgtgggcaatggcgagcctcctgtcatagcgatccgcgtgtcgcgtggcggcggcggc
ccgacaccgggcatcggcgaccgcgtgctagccaagacctttccaaccgatgacgcgacg
ggccctgcctataccgggcgggtgatgaagatcttcgagaagcgcaccgatgccgttctc
ggcgtcttccgcgtgctgcaggacggtacctttcgcatcgagcctgtcgaaagacgccag
ccggagctggtcgtcgacaaggaattccagaacggcgccaagaacggcgatctggtcgag
gtcgagccggcgcgggcctcccgctacgggctgcccagagccaaggtgctggcggtgctg
ggttcgctgaccagcgaaaaggcggtctcgatgatcgccattcacgcgcacgacattcca
catattttcccggcagacgtcatcgccgaggcagaggcggtcaaaccggcaacgctggcc
gaccgcgaggactggcgcgacttgccactggtcaccatcgatccggccgacgccaaggac
catgacgacgcggtattcgccacgccggacacggacgaaaagaaccctggtggcgtggtc
gtcaccgtggcgattgcagatgtcgccgcctatatccgctatggcactgcgctcgatcgc
gaggcgctgaagcgcggcaattcggtctatttccccgatcgcgtcgtgccgatgctgccg
gagcgcatctccaacgacctttgttcgctgcgcgaaggccaggatcgtccggcgctggca
gtccgcatgaccttcgcggccgacggccgcaagctcaggcattcgttccaccgcatcatg
atgaaatcggcggcgaaactcgcctatccccaagcgcaggccgcgatcgacggcgtgcgg
gacgacaagaccggcccgatcctcgacacggtgctgaagccgctctgggatgcctacgcc
gtcgtgaagcgcggccgtgacacgcgccagccgctcgagctcgacctgccggagcggaaa
attctgctcaaggaggacggcaccgtcgatcgggtcgtcgtgccggagcggctcgacgcg
cacaagctgatcgaagagttcatgatccaggccaatgtcgcggccgccgagacgctggag
gcgaaacgacaggcgctggtctaccgcatccatgacgcgccttcgctcgccaagcaggaa
tcgctgcgtgagttcctgcagacgctaggcctgtcgttggcgcgcggtgcgcagatgcgg
ccgaatcagttcaacggcatcctggatcgcgtccgcggcgccgaccatgaggggctggtc
aacgaggtggtgctgcgcacgcagatgcaggccgaatattcgcccagcaacatcggccat
ttcggcctcaatctgaagcgctacgcgcatttcacctcgccgatccgcagatatgccgac
ctgatcgtgcaccgtgggctgattgccgcactcggcttcggtgcgggcggactgacgcag
gacgaggcggagcggttggaagaggtttctgcgctgatctcggccaccgagcgccgtgcc
atggccgccgagcgcgacacggtcgaccggctgatcgccgcctatctggccgagcgtgtc
gacgagcgtttcgatgcacgcatttcgggcgtcaccaaatcgggactatttgtccaattg
ccgcagtatggcgcagatggtttcatcccggtgtcaagtctggacggcgattactatatc
tacgacgaaactgcccgatcgcttttcggagaacgcaccggcaagggctatcagcttgcc
gaccgcgtcgaggttcgcctgatcgaggtggcgcctatggccggcgcgatgcgtttcgag
atgctgaccgacccaaagccgctgcccggctccaaaccgtcgtttcacaagaccaaaggc
cgcgcccgcgcgtcgcaatcgcgtccaggctcacgcggcaggagacggtaa
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