Mesorhizobium mediterraneum: LRP31_22105
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Entry
LRP31_22105 CDS
T09205
Name
(GenBank) DEAD/DEAH box helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
mmei
Mesorhizobium mediterraneum
Pathway
mmei03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmei00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
LRP31_22105
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmei03019
]
LRP31_22105
Enzymes [BR:
mmei01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
LRP31_22105
Messenger RNA biogenesis [BR:
mmei03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
LRP31_22105
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
AAA_19
ResIII
ERCC3_RAD25_C
Motif
Other DBs
NCBI-ProteinID:
WIW56863
LinkDB
All DBs
Position
complement(4559016..4560419)
Genome browser
AA seq
467 aa
AA seq
DB search
MTGENNLTGTNTGELSGFAALGITGALLKATHGAGFTEPKPIQAQAIPPQLEGRDIFGIA
QTGSGKTAAFALPILSKIIALGTKRRPKTARALILAPTRELAVQIEEMIKLLAKGAHVST
ALVLGGVSRFSQVKKIAPGVDILIATPGRLTDLVREGDLVLADTKWLVLDEGDRMLDMGF
INDVKRIARATAPDRQTVLFSATMPAEIAELAKGLLKNPIRVEVAPHSTAAAEIVQGVVF
ARTKQKRQVLSTMLADEAMKSVIIFSRTKHGADRVTKDLERDGFKAAVIHGNKSQNARQK
ALNDFREGSVRILVATDIAARGIDVPGISHVVNFDLPDEAESYVHRIGRTGRNGMDGIAI
TLCDPSENSKLRQVERIIRTKLPIVADHLGSPDPQRNPAEKNERTFEPANDRNGRRDGRR
PGGQNNGKKRFGDKPAFAGERKPEGAKPFKGNNKRRFGGKRPAARAA
NT seq
1404 nt
NT seq
+upstream
nt +downstream
nt
ttgaccggtgaaaacaatttgaccggtacgaacactggggaactttcaggtttcgcagca
ctcggaatcaccggcgcgctgctcaaggccacccatggcgccggcttcactgagccgaag
ccgatccaggcccaggcgatcccgccgcagctcgaaggccgtgacattttcggcatcgcc
cagaccggttcgggcaagaccgcggcgttcgcgctgccgatcctgtcgaagatcatcgcg
ctcggcaccaagcgccggccgaagaccgctcgcgcgctgatcctggcgccgacgcgtgag
cttgccgtgcagatcgaagagatgatcaagctgctcgccaagggcgcgcatgtctcgaca
gcactcgtgcttggcggcgtctcgcgcttcagccaggtgaaaaagattgctcccggcgtc
gacatccttatcgccacgcccggccggctgaccgatctggtgcgtgagggcgatctcgtg
ctcgccgacaccaaatggctggtgctggacgaaggcgaccgcatgctcgacatgggcttc
atcaacgacgtcaagcgcatcgccagggcgaccgcgccggaccgtcagacggtgctgttc
tcggcgaccatgccggccgaaatcgccgaactggcgaaaggcctgctgaagaacccgatc
cgcgtcgaggtggcgcctcacagcaccgccgcagccgagatcgtgcagggcgttgtcttc
gcccgcaccaagcagaagcgccaggtgctgtcgacgatgctcgccgacgaggcaatgaag
tctgtcatcatcttttcgcgcaccaagcatggcgccgacagggtgaccaaggaccttgag
cgcgacggcttcaaggccgccgtcatccacggcaacaagtcgcagaacgcccgccagaag
gcgctgaacgatttccgcgagggttcggtgcgcattcttgtggcgaccgatatcgcggcg
cgcggcatcgacgtgcctggtatcagccacgtggtgaatttcgacctgccggacgaggcg
gagagctatgtccaccgcatcggccgtaccggccgtaacggcatggacggcatcgccatc
acgctttgcgatccctccgagaacagcaagctgcgtcaggtcgagcgcatcatccgcacc
aagctgccgatcgttgccgaccatctcggcagccccgatccgcagcgcaatcccgccgaa
aagaacgagcgcaccttcgagccggccaacgaccgcaatggtcgtcgcgacggcaggcgg
ccaggcggccagaacaacggcaagaagcgcttcggcgacaagccggcctttgccggcgag
cgcaagccggaaggcgccaagcccttcaagggcaacaacaagcgccgcttcggcggcaag
cggccagcggcgcgggctgcgtaa
DBGET
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