Mesorhizobium mediterraneum: LRP31_22360
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Entry
LRP31_22360 CDS
T09205
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmei
Mesorhizobium mediterraneum
Pathway
mmei03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmei00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
LRP31_22360 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmei03021
]
LRP31_22360 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmei03400
]
LRP31_22360 (rpoC)
Enzymes [BR:
mmei01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
LRP31_22360 (rpoC)
Transcription machinery [BR:
mmei03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
LRP31_22360 (rpoC)
DNA repair and recombination proteins [BR:
mmei03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
LRP31_22360 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
DUF6744
RnfC_N
Phage_cement_4
Motif
Other DBs
NCBI-ProteinID:
WIW51800
LinkDB
All DBs
Position
complement(4602944..4607140)
Genome browser
AA seq
1398 aa
AA seq
DB search
MNQEVMNLFNPQAPAQVFDSIRISLASPEKILSWSFGEIKKPETINYRTFKPERDGLFCA
RIFGPIKDYECLCGKYKRMKYKGVICEKCGVEVTLSRVRRERMGHIELAAPVAHIWFLKS
LPSRIGTLLDMTLKDIERVLYFENYIVTEPGLTALKEHQLLSEEEYMMAVDEYGEDSFTA
MIGAEAIHDLLAGMDLEKIAGDLRSELASTTSELKQKKYLKRLKVVENFMESGNRPEWMI
MKVVPVIPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLIELRAPGIIVRNEKRM
LQEAVDALFDNGRRGRVITGANKRPLKSLSDMLKGKQGRFRQNLLGKRVDYSGRSVIVTG
PELKLHQCGLPKKMALELFKPFIYARLDAKGYSSTVKQAKKLVEKERPEVWDILDEVIRE
HPVLLNRAPTLHRLGIQAFEPILIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQL
EARVLMMSTNNILHPASGAPIIVPSQDMVLGLYYLSIVNQNEPGEGMVFADMGELQHALE
TKAVTLHSKIKGRFRTVDAEGKVVSKIHDTTPGRMIIGELLPKNVNVPYETANQEMTKKN
ISKMIDTVYRHCGQKETVIFCDRIMALGFSHACRAGISFGKDDMLIPDAKIKLVSDTEAL
AKEYEQQYNDGLITQGEKYNKVVDAWAKCSEKVADEMMARIKAVEFEDNGRQKPMNSIYM
MSHSGARGSPTQMRQLAGMRGLMAKPSGEIIETPIISNFKEGLTVLEYFNSTHGARKGLA
DTALKTANSGYLTRRLVDVAQDCIVNSVDCGTDKGLTMQPIVDAGQVVASVGQRVLGRTS
LDDITHPVTGEVLVKAGTLMDERDVEEIEKAGVQSVRIRSALTCDVRVGVCAVCYGRDLA
RGTPVNQGEAVGVIAAQSIGEPGTQLTMRTFHMGGTAQVVDSSFLEASYEGKVEIRNRNV
VRNSDGQQMVMGRNMAVLILDEAGKERATHRLTYGSRIFVDDGDKVKRGQRVAEWDPYTR
PILTEIEGKVAFEDLVDGISVQETADESTGITKREVIDWRSTPRGNDLKPAIVVQDAKGK
VGKLSKGGDARFLLSVEAILSVEPGAQVRPGDVLARIPMESAKTKDITGGLPRVAELFEA
RRPKDHAIIAEIDGTIRFGRDYKNKRRIIIEPHDSTLEPVEYLIPKGKPFHLQDGDVIEK
GDYILDGNPAPHDILAIKGVEALASYLVNEIQEVYRLQGVSINDKHIEVIVRQMLQKVEI
TVQGDSTYIPGDHVDVIELEEVNERLVEDGKKPAEGQPVLLGITKASLQTPSFISAASFQ
ETTRVLTEAAVAGKTDMLQGLKENVIVGRLIPAGTGGTMSQIRRIATSRDELIIDERRKA
SGVEVAEPMLTDMVNAAQ
NT seq
4197 nt
NT seq
+upstream
nt +downstream
nt
atgaaccaagaggtcatgaatctcttcaatccccaggcgcctgcgcaggtgttcgattcc
atccggatctcgctcgccagccctgagaagattctgtcctggtcgttcggcgagatcaag
aagccggagaccatcaactaccgcaccttcaagccggagcgcgacggcctgttctgcgcg
cgcatttttggtccgatcaaggactacgaatgcctgtgcggcaagtacaagcgcatgaag
tacaagggcgttatctgcgagaagtgcggcgtcgaagtcacgctgtcgcgcgtccgtcgc
gagcgcatgggccatatcgagctggccgcgcccgtcgcccatatctggttcctgaagtcg
ctgccgtcgcgtatcggcacgctgctcgacatgacgctgaaggatattgagcgcgttctc
tacttcgagaactacatcgtcaccgagcccggcctcaccgcgttgaaggagcaccagctc
ctcagcgaggaagagtacatgatggccgtcgacgaatatggcgaggatagcttcaccgcc
atgatcggcgccgaggccatccacgaccttctggccggcatggacctggagaagatcgcc
ggcgacctgcgttcggagctggcttcgaccacgtccgagctgaagcagaagaagtatctg
aagcggctcaaggtcgtcgagaacttcatggagtccggcaaccgtccggaatggatgatc
atgaaggtggttccggtgatcccgccggacctgcgcccgctggtcccgctggacggcggc
cgtttcgccacgtccgatctcaacgatctctatcgccgcgtcatcaaccgcaacaaccgc
ctgaagcggctgatcgagctgcgcgcccccggcatcatcgtgcgcaatgaaaagcgcatg
ctgcaggaagccgtcgacgcgctgttcgacaacggccgtcgcggccgcgttatcaccggc
gccaacaagcgcccgctgaagtcgctgtccgacatgctcaagggcaagcagggccggttc
cgccagaacctgctcggcaagcgcgtcgactattccggccgctcggtcatcgtgaccggc
ccggagctcaagctgcaccagtgcggcctgccgaagaagatggcgctcgaactgttcaag
cccttcatctatgcccgtctcgacgccaagggttactcgtcgactgtcaagcaggcgaag
aagctggtcgagaaggagcgtccggaggtctgggatatcctcgacgaggtcatccgcgag
catccggtgctcttgaaccgtgcgccgacgctgcaccgcctcggcatccaggcattcgag
ccgatcctgatcgaaggcaaggcgatccagcttcacccgctggtctgcacggccttcaac
gccgacttcgacggcgaccagatggcggttcacgtgccgctgtcgctggaagcacagctt
gaagcccgcgtgctgatgatgtcgaccaacaacatcctgcacccggcttccggcgcgccg
atcatcgtgccgtcgcaggacatggttctaggtctctactatctctcgatcgtcaatcag
aacgagccgggcgagggcatggtgtttgccgacatgggcgaactccagcatgcgctcgag
accaaggcggtgacgttgcattccaagatcaagggtcgtttccgcacggtcgatgccgaa
ggcaaagtcgtgtcgaagatccatgacaccacgcctggccgcatgatcatcggcgaactg
ctgccgaagaatgtcaacgtgccttacgagaccgccaaccaggagatgaccaagaagaac
atctccaagatgatcgacaccgtctaccgccattgcggtcagaaggagacggtcattttc
tgcgaccgcatcatggccctcggcttcagccacgcctgccgcgccggcatttcgttcggc
aaggacgacatgctgatcccggatgccaagatcaagctggtctccgataccgaggctttg
gccaaggaatacgagcagcagtacaatgacggcctgatcacgcagggcgagaagtacaac
aaggtcgtcgacgcctgggccaagtgctcggaaaaggtcgccgacgagatgatggcccgc
atcaaggcggtcgagttcgaggacaatggccgtcaaaagccgatgaactcgatctacatg
atgtcgcactccggtgcgcgcggctcgcccacccagatgcgccagcttgccggtatgcgc
ggcctgatggccaagcctagcggtgagatcatcgagacgccgatcatctcgaacttcaag
gaaggcctgaccgtgctcgagtacttcaactcgacccacggcgcccgcaagggtctggcc
gacaccgccttgaagacggcgaactcgggctacctcacccgtcgtctggtcgacgtggcg
caggactgcatcgtcaactccgtcgactgcggcaccgacaagggcctcaccatgcagccg
atcgtcgatgccggccaggtcgtcgcctccgtcggccagcgcgttctcggccgcacgtcg
ctcgacgacatcactcatccggtcacgggtgaggttctggtcaaggccggaacgctgatg
gacgaacgcgacgtcgaagagatcgaaaaggccggcgtccagtcggtccgcatccgctcg
gcgctgacctgcgacgtcagggtcggtgtctgcgcggtctgctacggacgcgatctggcc
cgcggcaccccggtcaaccagggcgaggctgtcggcgtcatcgccgcgcagtcgatcggc
gagccgggcacccagctcaccatgcgtaccttccacatgggcggtactgcgcaggtggtg
gatagctcgttccttgaagcctcctatgagggcaaggtcgagatccgcaaccgcaacgtg
gtgcgcaactccgacggccagcagatggtcatgggccgcaacatggcggtgctgatcctc
gacgaagccggcaaggagcgtgccacgcaccgcctcacctatggttcgcgcatcttcgtg
gacgatggcgacaaggtgaagcgcggccagcgcgttgccgagtgggatccctatacccgc
ccgatcctcaccgagatcgagggcaaggtggcgttcgaggatctggtcgacggcatttcc
gttcaggagacggccgacgaatcgaccggcatcaccaagcgcgaggtcatcgactggcgt
tcgacgccacgcggcaacgacctcaagccggcgatcgtcgtccaggatgccaagggcaag
gtcggcaaactgtcgaagggcggcgacgcccgcttcctgctctcggtcgaggccattctt
tcggtcgagccgggtgcgcaggttcgccccggcgacgtgctggcgcgtatcccgatggaa
agcgccaagaccaaggacatcaccggcggtctgccgcgtgttgccgaactgttcgaggca
cgccgtccgaaggatcacgccatcatcgccgagatcgacggcacgatccgcttcggccgc
gactacaagaacaagcgccgcatcatcatcgagccacatgactcgacgcttgagccggtc
gaatacctgatcccgaagggcaagccgttccatctccaggacggcgacgtcatcgagaag
ggcgactacatcctcgacggcaatccggcgccgcacgacatcctggcgatcaagggcgtg
gaggcgcttgcgtcctacctcgtcaacgagatccaggaggtctaccgcctgcagggcgtg
tcgatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcagaaggtcgagatc
accgtccagggcgactcgacctacattccgggcgaccacgtcgacgtgatcgagctggaa
gaggtcaacgagcgcctggtcgaggacggcaagaagccggccgaaggccagccggtgctc
ttgggcatcaccaaggcctcgctgcagacgccgtccttcatctcggccgcctccttccag
gagacgaccagggtgctgaccgaagcggcggttgccggcaagaccgacatgctgcagggg
ctgaaggaaaacgtcatcgtcggccggctgatcccggccggcaccggcggcacgatgagc
cagatccggcgcatcgccacctcgcgcgacgagttgatcatcgacgagcgccgcaaggcg
tcaggcgtcgaggtcgccgaaccgatgttgaccgacatggtcaacgccgcgcagtaa
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integrated database retrieval system
