Methylococcus mesophilus: OOT43_00670
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Entry
OOT43_00670 CDS
T09468
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mmeo
Methylococcus mesophilus
Pathway
mmeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OOT43_00670
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmeo03019
]
OOT43_00670
03009 Ribosome biogenesis [BR:
mmeo03009
]
OOT43_00670
Enzymes [BR:
mmeo01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
OOT43_00670
Messenger RNA biogenesis [BR:
mmeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
OOT43_00670
Ribosome biogenesis [BR:
mmeo03009
]
Prokaryotic type
rRNA helicases
OOT43_00670
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
DeaD_dimer
ResIII
CMS1
UvrA_inter
Transketolase_C
Cas3-like_C_2
DUF6683
Motif
Other DBs
NCBI-ProteinID:
UZR29170
LinkDB
All DBs
Position
complement(121944..123677)
Genome browser
AA seq
577 aa
AA seq
DB search
MQSTEISFSFSDLAISAPILQAIREIGYETPSPIQAASIPHLLAGHDLLGQAQTGTGKTA
AFALPILNGIDLERREPQALVLAPTRELALQVAEAFQSYARHLPDFHILPIYGGQSMDAQ
LRHLRRGVHVIVGTPGRVMDHLRRKSLSLDSLRTLVLDEADEMLRMGFIEDVEWILEHTP
PQRQIALFSATMPEVIRKVAKRHLRHPKEAKIEAKTATVEAITQRYWLGSGAHKLDALTR
ILEVEDFDAMIIFVRTKVLTEELAEKLEARGYSASALNGDMSQALREKAVDRLKKNTLDI
LVATDVAARGLDVERISHVVNYDIPYDTEAYVHRIGRTGRAGRKGQAILFVAPREKRMLS
AIEKATRQRIAEMRLPSHQDIAERRVEQFKAQVMATLEEENLDFFRPLVQQLGREQGISP
TDIAAALTFLVQKDRPLVPDEKPAPAEYTPSGREPQKKFRDSEPRDKKPKRKEREDGGVL
YRIDVGRNDGAAPKDIVGAIANEADIPGSAIGHIKLYDDFSTVSLPADMPKKSLKRLEKV
WIVGKPINIRLWTGDAPAAPVFDKPKKKKKGYPKKNG
NT seq
1734 nt
NT seq
+upstream
nt +downstream
nt
atgcaatcgactgaaatttctttttccttttccgatctggccatctcggctcccattctc
caggcgatccgcgaaatcggctacgagaccccctcgcccatccaggcggcgagcattccc
catctcctcgccggccacgatctgctgggccaggcccagaccggcaccggcaagaccgcc
gctttcgccctgccgatcctgaacggcatcgatctcgagcgccgcgaaccccaggccctg
gtgctggcgccgacccgcgagctggcgctgcaagtcgccgaagccttccagagctacgcc
cgccatctgcccgatttccacatcctgccgatctacggcggccagtcgatggacgcccag
ttgcgccatctgcgccgcggcgtccacgtcatcgtcggcacgccaggccgggtgatggac
catctgcgccgcaagagcctcagcctggacagcctgcgcaccctggtgctggacgaggca
gacgagatgctgcggatgggcttcatcgaagacgtcgagtggatcctggagcacaccccg
ccccagcgccagatcgccctgttctcggccaccatgccggaggtgatccgcaaggtcgcc
aaacgtcatctgcgccaccccaaggaagccaagatcgaggccaagaccgcgaccgtcgag
gcgattacccagcgctactggctgggctcgggcgcgcacaagctcgacgcgctgacccgc
atcctcgaagtcgaggacttcgacgccatgatcatcttcgtccgcaccaaggtgctgacg
gaagaactggcggaaaaactggaggcccgcggctattccgcctccgccctgaacggcgac
atgagccaggcgctgcgtgaaaaggcggtcgaccgcttgaagaaaaacaccctcgacatc
ctggtcgccaccgacgtcgccgcccgcggcctggacgtcgaacgcatcagccatgtggtg
aactacgacatcccctacgacaccgaggcctacgtccaccgcattggccgcaccggccgc
gccgggcgtaaaggccaggctatcctgttcgtcgccccgcgcgaaaagcgcatgctgagc
gcaatcgaaaaagccacccgccagcgcatcgccgagatgcgcctgcccagccatcaggac
atcgccgaacgccgggtcgagcagttcaaggcccaggtcatggcgacgctggaagaggag
aacctagacttcttccggccgctggtccagcaactcggaagggaacagggtatttcgccc
accgatatcgctgcggctctcaccttcctggtccagaaggaccgtccgctggttccggac
gagaagcccgcaccggccgaatacaccccgtccggccgcgaaccgcagaagaaattccgc
gatagcgaaccgcgggacaagaaacccaagcgcaaggagcgcgaagacggtggcgtgctc
taccgcatcgacgtgggccgcaacgacggggccgcgcccaaggacatcgtgggcgccatc
gccaacgaagcggatattcccggcagcgccatcggccacatcaagctgtacgacgacttc
agcacggtcagcctgccggccgacatgcctaaaaagtcgctgaaacggctggagaaagtg
tggatcgtcggcaagccgatcaacatccggctctggaccggcgacgcgcctgccgcaccg
gttttcgacaagccgaagaagaagaagaagggttatccgaagaagaacggctga
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