Methylococcus mesophilus: OOT43_05125
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Entry
OOT43_05125 CDS
T09468
Symbol
rlmD
Name
(GenBank) 23S rRNA (uracil(1939)-C(5))-methyltransferase RlmD
KO
K03215
23S rRNA (uracil1939-C5)-methyltransferase [EC:
2.1.1.190
]
Organism
mmeo
Methylococcus mesophilus
Brite
KEGG Orthology (KO) [BR:
mmeo00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
mmeo03009
]
OOT43_05125 (rlmD)
Enzymes [BR:
mmeo01000
]
2. Transferases
2.1 Transferring one-carbon groups
2.1.1 Methyltransferases
2.1.1.190 23S rRNA (uracil1939-C5)-methyltransferase
OOT43_05125 (rlmD)
Ribosome biogenesis [BR:
mmeo03009
]
Prokaryotic type
rRNA modification factors
23S rRNA modification factors
OOT43_05125 (rlmD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
tRNA_U5-meth_tr
Methyltransf_31
Methyltransf_25
TRAM
MTS
Met_10
Methyltransf_11
RrnaAD
Methyltransf_23
Methyltr_RsmB-F
Cons_hypoth95
PCMT
Methyltransf_15
FtsJ
Methyltransf_32
Methyltransf_4
Motif
Other DBs
NCBI-ProteinID:
UZR30022
LinkDB
All DBs
Position
complement(1139403..1140734)
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AA seq
443 aa
AA seq
DB search
MGYRGKKKPLPVEPIAAHIESFAHDGKGIAHVDGRVVFVDGALPGENVTFVYTEIKRDYA
AGRVEDIVTASPDRVPARCQHFALCGGCSLQYLSEDAQIALKEDLLLEQFRRIGKVEPAA
QFPPLRGPHWGYRSRARLGARYVAKKGRELVGFREKSTALIVDMQACPVLHPALGERIRA
FAELIEGLSLRERLPQIEAAVGEERTALVFRVLEDPTPEDFARLAQFGKDHGLDVYVQRQ
GRDSVAPVYPETAHDLSYSLPEWDVTFRFGPLDFTQVNMAINRQMIDRVMQVLDPQPNER
VLDLFCGLGNFTLPLARRAAHVTGVEGGAESVARAIRNAADNGIGNVEFHVADLSKPERC
GPWAEREYDKVLLDPSRAGAQEILQCVPKWKAGRIVYVSCNPSTLARDAGILVHEHGYRL
LQAGVMDMFPHTAHVESIALFER
NT seq
1332 nt
NT seq
+upstream
nt +downstream
nt
atgggttatcgaggtaaaaaaaagccgctgccggtcgagccgatcgctgcgcacatcgaa
tccttcgctcacgacggcaaggggatcgcccacgtcgacgggcgggtggtgttcgtcgac
ggcgccttgccgggcgagaatgtcaccttcgtttacaccgaaatcaagcgggactacgcc
gccgggcgggtggaggatatcgtcacggcctcgcccgatcgcgtgccggcgcgatgccaa
catttcgccctttgcggcggctgcagcctgcaatatctgtccgaggacgctcagatcgcc
ctgaaggaggatctgctgctggagcagttccgccgcatcggcaaggtggagccggcggcc
cagtttccgccgctgcgggggccgcactggggctatcgtagccgggccaggctcggggcg
cgctatgtcgccaagaagggcagggagctggtggggttccgcgaaaaatccacggccttg
atcgtcgacatgcaggcttgcccggtgctgcatcccgccttgggcgagcgcattcgagct
ttcgccgagctgatcgaaggtctttcgctgcgggaacggctgccgcagatcgaggcggcc
gtgggcgaggagcgcaccgcgctggtgttccgggtgctggaagatccgacgcccgaggat
ttcgccaggctggcgcagttcggcaaggaccatggcctggacgtctacgttcagcgccaa
gggcgcgactcggtcgcgccggtctatccggagaccgcgcatgacctgagctacagcctg
ccggaatgggacgtgaccttccgcttcggtcccctggatttcacccaggtcaacatggcg
atcaatcgccagatgatcgaccgggtcatgcaggtgctcgatccgcagccgaacgagcgc
gtgctcgacctgttctgcggcctggggaacttcactctgccgctggcacgccgcgccgcc
cacgtcactggggtggaaggcggcgcggagtcggtcgcgagggcgatccggaacgcggcg
gacaacggtatcggcaacgtcgaattccacgtcgccgacctgtccaagccggaacgctgc
ggcccttgggccgagcgggagtacgacaaggtgctgctcgatccgtcccgcgccggcgcc
caggaaattttgcagtgcgtgccaaagtggaaagccgggcgcatcgtctacgtgtcctgc
aatccttccaccctggcgcgggatgcgggcatcctggtccacgaacacggttaccgtctg
ctccaggccggcgtgatggacatgttcccgcacaccgcccacgtcgaatccatcgctctg
ttcgagcgctga
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