Methylococcus mesophilus: OOT43_12520
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Entry
OOT43_12520 CDS
T09468
Symbol
rho
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
mmeo
Methylococcus mesophilus
Pathway
mmeo03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mmeo00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
OOT43_12520 (rho)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmeo03021
]
OOT43_12520 (rho)
03019 Messenger RNA biogenesis [BR:
mmeo03019
]
OOT43_12520 (rho)
Transcription machinery [BR:
mmeo03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
OOT43_12520 (rho)
Messenger RNA biogenesis [BR:
mmeo03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
OOT43_12520 (rho)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
AAA_22
OB_RNB
NACHT
AAA_25
S1CSD-TOTE-2
Mor
AAA
Motif
Other DBs
NCBI-ProteinID:
UZR27557
LinkDB
All DBs
Position
2640998..2642254
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AA seq
418 aa
AA seq
DB search
MNLTDLKRKPVSELIEIAESLDIEGVARTRKQDLIFSILKKLAKSGEDIYGDGVLEILQD
GFGFLRSPDSSFLAGPDDIYVSPSQIRRFSLRTGDTISGKIRPPKDSERYFAMLKVEQIN
YEPPENAKHKILFSNLTPLFPVDRFVLELGNGTTEDLTARVIDLVAPIGKGQRGLIVSPP
KAGKTMMLQNVAHSIAEKSPECYLIVLLIDERPEEVTEMQRSVKGEVVSSTFDEPPARHV
QVAEMVIEKAKRLVEHKRDVVILLDSITRLARAYNTVVPSSGKVLTGGVDANALERPKRF
FGAARNIEEGGSLTIIATALIDTGSRMDEVIYEEFKGTGNMELHLERKIAERRIYPAINI
NRSGTRREEYLVGPDELQKSWILRKILQPMDEMAANEFLLGKLKDSKTNREFFDMMKR
NT seq
1257 nt
NT seq
+upstream
nt +downstream
nt
atgaacctcactgacctcaagcgcaaacccgtatccgaactgatcgaaatcgccgaatcc
ctggacatcgaaggcgtcgcccgaacccgcaagcaggacctgatcttttccatcctgaag
aagctcgccaagagcggcgaagacatctacggcgacggtgtgctggagattttgcaggac
ggcttcggattcctgcgctcgccggacagctccttcctggccggaccggacgacatctac
gtctcgccgagccagatccggcgcttcagcctgcgcaccggggacaccatctccggcaag
atacggccgcccaaggacagcgagcgctatttcgccatgctcaaggtcgagcagatcaat
tacgagccgccggaaaacgccaagcacaagatcctgttctcgaacctgacgccgctgttc
ccggtcgatcgcttcgtgctggaactgggcaacggcaccacggaggacctgaccgcccgg
gtcatcgacctggtcgcccccatcggcaagggccagcgcggactgatcgtctcgccgccg
aaagccggcaagacgatgatgctgcagaatgtcgcccattccatcgcggaaaagagcccc
gagtgctatctcattgtcctgctcatcgacgagcggccggaggaagtgaccgagatgcag
cgcagcgtcaagggcgaggtcgtgtccagcaccttcgacgagccgccggctcggcatgtg
caggttgccgaaatggtcatcgaaaaggccaagcgtctggtcgaacacaagcgggatgtg
gtcatcctgctcgattccatcactcgcctggctcgcgcctataacaccgtggtgccctcc
tcgggcaaagtgctgaccggcggcgtcgacgccaacgccctagaacgcccgaagcgcttc
ttcggcgcggcgcgcaacatcgaggaaggcggcagcctgaccattatcgccacggccctg
atcgacacgggatcgcgcatggacgaagtgatctacgaagaattcaagggcaccggcaac
atggagctgcacctcgagcgcaagatcgctgagaggcgcatctaccccgcgatcaacatc
aaccgctccggcacccgccgcgaggaatacctggtcggtccggacgagctgcaaaaatcc
tggattctccggaagattctccagcccatggacgaaatggcggcaaacgaattcctgctg
ggcaagctcaaggattccaagaccaaccgcgagttcttcgacatgatgaagcgctga
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