Methylococcus mesophilus: OOT43_18270
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Entry
OOT43_18270 CDS
T09468
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mmeo
Methylococcus mesophilus
Pathway
mmeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mmeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
OOT43_18270 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mmeo03021
]
OOT43_18270 (rpoC)
03400 DNA repair and recombination proteins [BR:
mmeo03400
]
OOT43_18270 (rpoC)
Enzymes [BR:
mmeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
OOT43_18270 (rpoC)
Transcription machinery [BR:
mmeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
OOT43_18270 (rpoC)
DNA repair and recombination proteins [BR:
mmeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
OOT43_18270 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
RPOC_hybrid
Peptidase_M23
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
UZR31052
LinkDB
All DBs
Position
3845956..3850146
Genome browser
AA seq
1396 aa
AA seq
DB search
MNFLKRQTQSEEFDAIRISLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAKIFGP
VSDYECLCGKYKRLKHRGVICEKCGVEVTLSKVRRERMGHIELASPVAHIWFLKSLPSRI
ALLLDMQLREIERVLYFESYVVIDPGMTPLNRGQLLGEEEYQKMVEQYDDEFSAKMGAEA
IRELLRTMDLQAEVVHLREEINGTSSETKIKKYTKRLKAIESMLVSNNRPEWMILTVLPV
LPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQESVD
ALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPTLRLH
QCGLPKKMALELFKPFIFSKLQFRGLATTIKAAKKMVEREAPEVWDILDEVIREHPVMLN
RAPTLHRLGIQAFEPTLIEGKAIQLHPLVCTAFNADFDGDQMAVHVPLSLEAQLEARSLM
MATNNILSPANGEPIINPTQDVVMGLYYMSRERTFAKGEGMIFTSIDEAEQAFLNGAVDL
HAKVTVRLREVVLGENGERTEVTKRVQTTVGRALIWNVVPDGIPFEMINVDMTKKAISRL
INHAYRTLGIKASVIFGDQLMYLGFSHATRAGVSFGVEDMEIPPRKDEIIQAAEREVKEI
QNQFASGLVTDGERYNKVVDIWSHANDQVAKVMMEGLGVDEVTGENGETTKQKSFNSIFM
MADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLTVLQYFISTHGARKGLA
DTALKTANSGYLTRRLVDVAQDLVITEVDCGTTDGLQMAPLIEGGDVVEPLAERVLGRVL
AEHAADPSNGEVLFEAGSMLDEYAVQLLEQHGVDNVRVRSVITCKTRYGVCASCYGRDLG
RGHKVNIGEAIGVIAAQSIGEPGTQLTMRTFHIGGAASRSAAISNVEVKSSGQIRLTNLK
TVVNRDNALVAVSRSGEISVIDEHGRERERYKIPYGAVLSVREGGAVKAGQIVVNWDPHT
HPVVSEVRGRAKLIDFVEGVTVREQSDEMTGLSSMVVIDPKQRGGAGKELRPLVKLVDEE
GNDIFIPSTEITAQYFLPAGAIIGIRDGDLVEVGDVLARIPQESSKTRDITGGLPRVADL
FEARKTKDPAILAEATGTVSFGKETKGKRRLVITDASGEQHEVMVPKWRNITVFEGEHVE
QGETIAEGELTPHDILRLRGTAELASYLVKEIQDVYRLQGVKINDKHIEVIIRQMLRKVE
ITDPGDSSFLRGEQADRSRLLEENDRLEEEGKVPACYEPVLLGITKASLSTESFISAASF
QETTRVLTEAAIRGSTDRLQGLKENVIVGRLIPAGTGLAYHAERKERAKLGEVAEPEAPT
IDTAEVEEALKQAFSL
NT seq
4191 nt
NT seq
+upstream
nt +downstream
nt
atcaattttctgaagcgccagacgcaaagcgaagagttcgatgcgatccgcatcagcctg
gcttcgcctgacatgatccgttcctggtcctatggtgaggtgaagaagcccgagaccatc
aactaccggaccttcaagccggagcgcgatggcctgttttgcgccaagatcttcgggccg
gtgagcgattacgaatgtctctgcggcaagtacaagcgcctgaagcaccgcggcgtgatc
tgcgaaaaatgcggcgtggaagtcaccttgtccaaggtgcgtcgcgagcgtatggggcac
atcgagctggcgagtccggtcgcgcatatctggttcctcaagtcactgccttcgcgcata
gccctgctgctcgacatgcagctgcgcgaaatcgagcgggtgctttacttcgagtcctat
gtcgtgatcgatccgggcatgacgccgctcaaccgcgggcagctcctcggtgaggaggag
taccagaagatggtcgagcagtacgacgacgagttttccgccaagatgggcgccgaagcc
atccgcgaactgctgcgcaccatggatctccaggccgaggtcgtgcacttgcgggaggaa
atcaacggcaccagctccgagaccaagatcaagaaatacaccaagcgcttgaaggcgatc
gagtcgatgctggtttccaacaaccggccggagtggatgattctcaccgtgctgccagtg
ctgccgccggacctgcgtccgctggtgccgctcgatggcggccgcttcgccaccagcgat
ctcaacgacctgtaccgccgcgtcatcaaccgcaacaaccgtctcaagcggctgctggat
ctcaatgcgccagacatcatcgtccgcaacgagaagcgcatgctgcaggaatcggtcgat
gcgctgttggacaacggccgccgcggtcgggcgatcacgggttcgaacaagcgcccgctc
aagtcgctcgccgacatgatcaaaggtaagcagggtcgcttccgccagaacctcctgggc
aagcgggtggactactccggccgctcggtgatcgtggtgggtccgaccctgcgtctgcat
cagtgcggtctgcccaagaagatggcgctggagctgttcaagccgttcatcttcagcaag
ctgcagttccgtggcctcgccaccaccatcaaggcggccaagaaaatggtggaacgggaa
gcgcccgaagtctgggatatcctggacgaagtgatccgcgaacacccggtcatgctgaac
cgcgcaccgacactgcaccgtctgggtatccaggcgttcgagccgaccctgatcgaaggc
aaggcgatccagttgcatcccctggtatgcaccgcattcaacgccgacttcgacggcgac
cagatggccgtgcacgtgcctttgtcgctggaggcacagctcgaagcccggtccctgatg
atggcgaccaacaacatcctgtcgccggccaacggcgaacccatcatcaacccgacccag
gacgtcgtcatgggtctgtattacatgagccgggagcgcactttcgccaaaggtgagggc
atgatcttcaccagcatcgacgaggccgagcaggcattcctcaacggtgcagtggacttg
cacgccaaggtgacggtccggctgcgcgaggtcgttctgggcgaaaacggcgagcgtacc
gaggtgacgaagcgggttcagaccacggtgggccgtgcgctgatctggaacgtcgtgccg
gacggcatcccgttcgagatgatcaacgtcgacatgaccaaaaaggccatttcgcgtctg
atcaatcatgcctaccgaactctgggcatcaaggccagcgtcattttcggcgaccagctg
atgtatctcggtttctcgcatgcgacccgggccggcgtatcgttcggcgtggaagacatg
gagatccccccccgcaaggacgagatcatccaggccgccgagcgcgaagtgaaggaaatc
cagaaccagttcgcctccggcctcgtgaccgacggcgaacgctacaacaaggtcgtcgac
atctggtcgcatgccaacgaccaggtggcgaaagtgatgatggaaggcctcggcgtggac
gaggtcacgggcgaaaacggcgagacgaccaagcagaagtcgttcaactcgatcttcatg
atggccgattccggagcccgcggctcggcggcacagatccggcagttggccggcatgcgc
ggcctgatggccaagccggacggctcgatcatcgagacaccgatcacggcgaacttccgg
gaagggctgacggtattgcagtacttcatctcgacccacggcgcccgcaaaggtctggcc
gacaccgcgctcaagacggccaactcgggttatctgacgcgccgcctggtggacgtcgcc
caggacctcgtcattacggaggtcgattgcggtacgacggacggcctgcaaatggctccg
ctgatcgaaggcggggatgtcgtcgagccgctggcggagcgggtgctgggacgggttctg
gccgagcatgcggccgatccgtcgaacggcgaggtgctgttcgaagccggttcgatgctg
gacgagtatgctgtgcagctgctcgagcagcacggtgtcgacaacgtccgggtacgttcc
gtcatcacctgcaagacccgttacggcgtgtgcgcctcctgctacgggcgcgatctcggc
cggggccacaaggtcaacatcggcgaagcgatcggcgtgatcgcggcgcagtcgatcggc
gagcccggcacgcagctcaccatgcggaccttccacatcggcggcgcggcctcgcggtcg
gcggcgatcagcaacgtcgaagtgaagtcgagcggacagatccggttgacgaacctcaag
actgtggtcaaccgcgataacgctctggtggccgtgtcgcgttcgggcgaaatcagcgtg
atcgacgaacatggccgcgagagggagcgctacaagattccctacggtgcggtgctgtcg
gtgcgggaaggcggcgcggtcaaggcgggccagatcgtggtgaactgggatccgcatacc
catccggtcgtgtccgaagtgcgcggccgcgccaagctgatcgatttcgtcgagggcgtg
accgtccgcgagcagtccgacgaaatgacgggcctgagctcgatggtggtcatcgatccc
aagcagcgcggcggcgcgggcaaggaactgcggccccttgtgaagctggtggacgaggag
ggcaacgacatcttcatcccctccacggagatcactgcgcagtacttcctgccggccggg
gcgatcatcggcatccgcgacggcgacctggttgaagtgggcgacgtgctggcgaggatt
ccgcaggagtccagcaagacgcgcgacatcaccggcggtctgccgcgcgtcgcggacctg
ttcgaagctcgcaagaccaaggatcccgccatcctggccgaggcgaccggcacggtttcg
ttcggcaaggaaaccaagggcaagcgccgcctcgtcatcaccgatgcgagcggcgagcag
cacgaggtcatggtgccgaagtggcgcaacatcacggtgttcgaaggcgagcacgtggag
cagggcgaaaccatcgccgagggcgagctgacgccgcacgacatcctgcggctgcgcggc
accgcggagctggcctcctatctggtcaaggaaatccaggacgtttaccggctgcagggc
gtgaagatcaacgacaagcacatcgaggtgatcatccgccagatgctgcgcaaggtcgaa
atcaccgatccgggcgattccagcttcctgcgcggcgaacaggcggaccggtcgcggttg
ctggaagagaacgaccgcctggaggaggagggcaaggtgcccgcgtgttacgagccggta
ctgctgggcattaccaaggcttcgctgagcaccgagtcgttcatctccgcagcttcgttc
caggaaaccacgcgcgtgctgaccgaagcggcgatccgggggtccaccgaccgtttacag
ggcctcaaggagaacgtgattgtggggcgtctgatcccggcgggcaccggtctggcctac
catgcggagcgcaaggagcgggcgaagctcggcgaggttgcggagcccgaagccccgact
atcgatacggcggaggtggaagaggcactgaaacaagcgttcagcctctga
DBGET
integrated database retrieval system
