Mercenaria mercenaria (northern quahog): 123522942 Help Entry 123522942         CDS       T07835                                  Name (RefSeq) 3'-5' RNA helicase YTHDC2-like   KO K20099   ATP-dependent RNA helicase YTHDC2 [EC:5.6.2.6] Organism mmer  Mercenaria mercenaria (northern quahog) Brite KEGG Orthology (KO) [BR:mmer00001]  09180 Brite Hierarchies   09182 Protein families: genetic information processing    03041 Spliceosome [BR:mmer03041]     123522942 Enzymes [BR:mmer01000]  5. Isomerases   5.6  Isomerases altering macromolecular conformation    5.6.2  Enzymes altering nucleic acid conformation     5.6.2.6  RNA 3'-5' helicase      123522942 Spliceosome [BR:mmer03041]  Other splicing related proteins   Spliceosome associated proteins (SAPs)    RNA helicase-like proteins     123522942 BRITE hierarchy SSDB OrthologParalogGene clusterGFIT Motif Pfam:  YTH Helicase_C HA2_C DEAD R3H HA2_N OB_NTP_bind Ank_2 Ank AAA_19 nSTAND3 Ank_5 AAA_22 Ank_3 ATPase NPHP3_N TrwB_AAD_bind AAA_29 PhoH T2SSE Motif Other DBs NCBI-GeneID:  123522942 NCBI-ProteinID:  XP_045156414 LinkDB All DBs Position 8:18512380..18580552 Genome browser AA seq 1567 aa AA seqDB search MPKKGKKPDWGVRPDVGPKPYQDICISEEVKIGINLAIERFRLNETQKELEFPTSLTATE RAYIHRLSDELSLKHKSKGQGASRYLVLAKKDVGSMASRSAAFQLVRNSRYQIGNMLQRF PVTSKERQELLPNTDKSQVNEVSKELACTATGRLNNGIPQIPPVKGRSDLQNFTKSLPIN QYKEEILGMIRENQVCLISGETGSGKTTQVPQMILDDCHQNKQACRIFCTQPRRIAALSI SERVASERNENVGQTVGFQIRLESRVSPKTLLTFCTNGVLLRTLMGSGDALSTVTHVIVD EVHERDKFCDFLMVSLRDIVRRRPDFKVILMSATLNTELFVKYFDNCPAICVPGNLFPVE EYYLEDVIKWTGYTNRKMEKYRVELDEMETRTEQLSQWCNQDPNTFDPRTFSKRKRKKKK QVIHGVCADIEIEESSSDTDREPDDRADLTEQLSSLGLSKEKDKDELEPWLIQEMDQCLS DIWLSGNEEQFPQVFYLIASENVSVDYQHSETTVTPLMIAAGRGFIDIVEQLLAIGADPT VKSSNDWTALDWAKKFEQTDIIALLEAHMLACEIGPEHEDLDVDEDSSLSEEDKKMLTVY QHCWDDDKVDIELAKSLLYIVVSTQPDGAVLIFLPGYDEIISLRNRIEDDDKFSNIRYSM FLLHSSMQSADQKKVFKPAAPGIRKIILATNIAETSITINDVVYVINSGKVKEKTFDALL KITMLKSNWISKASSAQRRGRAGRVRPGVCYHMYSKVRYHHLCDFATPELLRCPLQEICL QTKLLAPMNESIAEFLSKAPEPPPFLVTRSAISVLKQMDALDSNEDLTELGRHLADLPVE PHLGKMVLNSIVLKCIDPVLTIVCSLAYKDPFLLPGQPSEKRQVGNIRHEFAASTYSDHM ALLRLFQAWQKARTDGWERSFCSKNYVSPAVMEMIVGMRAQLLGQLRASGFVRARGGGDI RDLNTNSENWAVVKASLCAGAYPNIIRWDKPTWRFVGQVTEKIKLHTSSVLPQQAGVLPS EWLFYEEMTRSGKRSIGGLACVRCCTVISPATVAIFAGPSKLPSDALKDTAEEVADSLNT EHGPTSDSENEDPEDNKSCSLQFGDWLTFKADAESASLTLQLRQKWNSLFLRRMRAPSKP CTQMDEAVISAVVNVLTNEEQALGLQQPAGIGQRPRPMSAESIMSGGYAGHGQSTQHESS DNTWHRFSTSAKKASGTPTKRRDFMSPKMNKSGDNSQHNSPSLSQHGSDKGSPFHSPMAS GSGAARYFIMKCSSQRNIDISINKGAWATSKANEQRLNKAFQEGSTVYLIYSIQGSGHFQ GYAIMSSCVGAERSSDYNGQGGVFSVDWIKRGNLQFQATHHLLNPWNENKRVQVSRDGQE IEPSVGEALTCLWDCYNDDSSQIEAAESKWTGSHQYANNNMTPRGAYDECELYTDFGRDG SYGNSHNQYGYQGQQYGNQQYGNQGQQYGYHGQQFAHTRQPYGHQQGYEAYQSWGGNGGN QQRYNYNQRHYSNRGHGNTGFGNYGYHNQNVEYQMRGYDANSPLNRNSPVMILQRGQHNA GYHKNKK NT seq 4704 nt NT seq  +upstreamnt  +downstreamnt atgccaaagaaaggaaagaagccagattggggagttcgtccagatgttggaccaaagcct tatcaagatatatgcatttcggaagaagttaaaattggaataaacttagcgatagaaaga tttaggttgaatgagacacagaaagagctcgagtttcctacatcccttacagcaactgaa cgagcatatattcacaggttgtccgatgaactttctctgaaacacaagagcaaagggcaa ggagcatcacgttaccttgttctcgcaaagaaggatgttggttctatggcgagcagaagt gcagcatttcagctagttcgtaattcccgttaccagattggcaacatgctacaaaggttt ccagttacaagcaaagaacgccaagagcttctgcccaacacagataaaagtcaagtaaat gaagtctcaaaagagcttgcatgcacagctactggacggctaaacaatggaataccccag attccaccagtgaaaggccgctcagacttacagaacttcacaaaatccttgccaattaac cagtataaagaagagattcttggaatgatcagagagaaccaagtttgcctgatctcggga gaaactggttctggaaaaactactcaggttccacaaatgattcttgacgactgtcaccaa aacaaacaagcatgtagaatattttgtactcagccacgccggatagcagcactcagtata tcagaacgtgttgcttcagagaggaatgagaatgtgggtcagacagttggttttcaaatc agacttgaaagcagggtgtctccaaagactctgctaacattttgtacaaatggtgtattg ttgcggaccttgatgggaagtggagatgctttgagtacagttacacatgttattgttgat gaggtgcatgagcgagacaagttttgcgactttttgatggtttccctacgtgatatagtt cgcaggagacctgatttcaaggtcattttgatgagtgccacattgaatacagaattattt gtcaagtattttgacaactgtcctgccatatgcgttcctggtaaccttttccctgtagag gaatactaccttgaagatgtcattaaatggacaggttatactaataggaagatggaaaag taccgtgtagagcttgacgaaatggaaacaagaacagaacagttatcacagtggtgtaat caagacccaaatacctttgaccctcgaactttttcaaagagaaaacggaagaaaaagaag caggttatacatggtgtatgtgcagatattgagattgaggagtcaagtagtgatacagac agggaaccagatgatcgagcagatcttaccgagcaattatcttcactgggtctgagcaag gagaaagacaaggatgagctggagccgtggttgatacaagagatggaccagtgtctctcc gatatatggctgtccggaaacgaggaacagtttccacaagtgttttatctgattgcttca gaaaatgtcagtgttgattaccagcatagtgagacaacggttacaccattaatgatagca gcagggcgagggtttattgatattgtcgaacagttgctggctattggggctgacccaact gtgaaatcatccaatgactggacagcacttgactgggcaaaaaagttcgagcaaacggac attattgctctgttagaagctcatatgttagcatgtgaaataggacctgagcatgaggat ctagatgttgatgaagattccagtttatcggaagaagacaagaagatgttgactgtgtac caacattgttgggatgatgataaagtggacatagaacttgcaaaaagtcttctatatata gtggtctccacacagccagatggtgcagttttgatatttttgcctgggtacgatgagatt atatcccttagaaacaggatagaggacgatgacaagttcagcaacattaggtattcaatg ttcctgttacactcttcaatgcagtcagcagaccagaagaaagtgtttaagcctgcagct ccaggcattagaaaaattattttagcaacaaatatagctgaaactagtattacaatcaac gatgtggtgtatgtcatcaactcaggcaaggtcaaagagaaaacatttgatgccttactg aagatcacaatgttgaaaagtaactggatttctaaagcaagttctgctcagagacgtgga agggcaggccgtgtacgtccaggtgtatgttatcacatgtacagtaaagtcagatatcac catttgtgtgatttcgcaaccccagaacttctcagatgccctctgcaggagatatgtctc caaacaaaattattagctcccatgaatgagagcattgccgagtttctgtctaaagcacca gagccaccaccattccttgtcacaagatcagccatctctgtattgaagcaaatggatgca ttagacagtaacgaggaccttacagaactaggtcgtcatctagcggaccttccggtggag ccacaccttggaaagatggtcctcaattctatcgtactgaaatgtattgatcctgtcctc accatagtctgctctcttgcatacaaggatccttttttattgcctggacaaccgtcggag aaaagacaagttggaaatatcagacatgagtttgctgcttcaacttacagtgatcacatg gctttacttagactcttccaggcatggcagaaggcgaggacagacggttgggaaaggtca ttctgttccaagaactacgtgtctccagctgtcatggagatgattgttggaatgagagca caactacttggtcagttacgggcttcaggatttgtacgtgctcgtggtggtggcgacatt agagatttgaacaccaactctgaaaactgggcagttgtgaaagcatcactgtgtgcaggg gcctatccaaacattatacgttgggacaagcctacatggagatttgtaggacaagttact gaaaagataaagctccatacatcatcagtattgccacagcaagctggagtcctaccttct gaatggctgttctatgaggaaatgacacgttcagggaaaaggtccattgggggattggct tgtgtaagatgttgtactgttatttcaccagcaactgttgcaatatttgctggaccatca aaactaccaagtgatgcattaaaagatacggctgaagaggtagcagatagtttgaacacg gagcatggaccaacaagtgacagtgaaaatgaggatcctgaagataataagagctgtagt cttcagtttggggactggctcacatttaaagcagacgctgagtctgccagtctcacatta caactaagacagaaatggaatagcctgttccttagaaggatgagagctccatctaaacca tgtacacaaatggatgaggctgtgatcagtgcagttgtgaatgtattaactaatgaagag caggctctgggtcttcaacaaccagctggaataggacagaggccaagacctatgtctgca gagagtataatgtcaggaggttatgcgggccatgggcagagtacgcaacacgagtcctca gacaacacatggcatagattctccacatcagccaagaaggcatctggtactcctacaaag agaagagatttcatgtcaccaaagatgaacaagtcaggagataactctcagcacaacagt cctagtctgagtcagcatggcagtgacaaaggatcaccatttcacagtcctatggctagt gggtctggtgcagccaggtatttcatcatgaagtgtagcagtcagaggaacattgatata tcaattaacaaaggagcatgggcaacatcaaaggcaaatgaacagaggttaaacaaggca tttcaggagggaagcacagtttacctgatatattctatccaaggcagtggtcatttccaa ggttatgcaatcatgtcatcttgtgttggtgcagaaaggtcgtcagactacaatgggcag ggtggggtgttctcagtggattggataaaaaggggtaaccttcagtttcaagcaacacat catttacttaacccctggaatgagaacaagagagtccaggtcagcagggatggtcaggaa atagagccatcagttggtgaagctttgacttgtctctgggattgttacaatgatgacagt agccagattgaggctgcagaatctaaatggactggttctcatcagtatgctaacaataac atgactcctagaggtgcctatgatgagtgcgagttgtatactgactttggaagagatggt agctatggcaacagtcataaccagtatggttaccaagggcaacagtatggtaaccaacaa tatggtaaccaaggtcaacagtatggttaccatgggcaacagtttgctcacacaagacaa ccatatggacaccaacaaggttatgaagcataccagagttggggaggtaatgggggaaac caacaaagatacaattacaaccaaagacattacagcaatagaggtcatggtaacacagga tttggtaactatggttaccataatcaaaatgttgaatatcagatgaggggttacgatgcc aattccccacttaacagaaattcccctgtgatgattctgcaaagaggacaacataatgca ggataccataagaacaaaaagtag

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