Mercenaria mercenaria (northern quahog): 123523814
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Entry
123523814 CDS
T07835
Name
(RefSeq) LOW QUALITY PROTEIN: nuclear pore complex protein Nup153-like
KO
K14296
nuclear pore complex protein Nup153
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03013
Nucleocytoplasmic transport
mmer03250
Viral life cycle - HIV-1
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
123523814
09125 Information processing in viruses
03250 Viral life cycle - HIV-1
123523814
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mmer03019
]
123523814
Messenger RNA biogenesis [BR:
mmer03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Nuclear pore complex
123523814
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Zn_ribbon_RanBP
Nup153
Nucleoporin_FG
Motif
Other DBs
NCBI-GeneID:
123523814
NCBI-ProteinID:
XP_045157450
LinkDB
All DBs
Position
3:101800481..101830063
Genome browser
AA seq
1631 aa
AA seq
DB search
MDRPSSHSQRVPYARKEGRKSLFSKMKDSMRDMLSPSWLTDLVHHVNKDSPTDDKNVAKG
SDQMTGMQPGPSGMPDMTASQTPVLPPGPVGMMGSDVQQAGMVRDSPFKNRGTFVGNGQP
RTLDFAGVGQGVNPSGTTASPFQQGNFPPPISEFTSAQLPLARVTEKSDSIMAQEDTLSQ
RSDGSKSTSGCSSMIPQADAPPRQGTVGDKRKAPEQVTLGGSSPQEQQAAKRQRLHVGSA
SNQTFSRRLSDSFVSRPSVPAMSSRPAFNTSLFGSPLNNESSLLGTSVHESSFYPGKTKF
GGRSSLSFRSQRKNVDLNQSLPSRLSVPVKAFMKARPRLNPSKEAVTSSTAKRILEALDK
MPTPINDAKRIPMVPRQWTESPSFFSRDTSRSIRSGPPTQKLNISSQASISKNRQVSFAP
VQQPRASTSQVPEETISRPTRQDTVILSSGAAAPSGKMKRDKSYHRGSASVKATLEEEDT
VIIPDLQTEFMLPVSSMPKFSFATPASQPKSNEPFKSSAVNRSPVGTESPVKQALNFTFS
SPIIEPVPANKPASPQKYGGFQFSSPISVDKKDSDSTGSTNFSKPLTTTTFGSGNTPAFS
FSSPATKLNMDVSFSTAPKPKPKINGPVEPAGGGLQAASELKQGSVMDILGGGNSSKSFS
SSTPLSTGLSDSQVSKAPPPLSAVFKQSGWSCDVCLINNKDEAGKCVACQSPKPGGQKPV
PISAPPPLSAVFKQSGWSCDVCLINNKDEASKCVACQSPKPGGQKLKDVSSTKTSDPAEP
LKSDLFAKFKQPGGSWTCDTCLIQNKQDDTKCVACQTRKPGSASSNMSPLVSSIQPGNWI
CNKCLIQNKKDDTICGACKAAKSTPKPSELNKSDSLFAKLKPAAGTWECEVCLVQNKSDD
NSCVACQTPKPLKFFKHPPGDWTCDTCLVNNKESAVNCVACNYARPGPPRTQTVPSIAKS
YTLSQASGFNIPSTESGSITMSSTGGFKFTPATSASSTKSGFDVSKFNENVNKSTDSKLS
SGGGFKFNSDSKSETSSSGFKFGTQTTSESDKSSVNTGGFKINAPSGDKPATGFQFGNSD
TKSENKDGPLKSAGFQFGKSDSSLSNISSSVSNESTTVGGFVLGQKSDTSAAKDELQATT
SVPGGFTFKSKDASAEKKDSDLTKFDKHLSSVGGFNFTSLTSTSNSLASTSSSSIGTFAF
TATKVTDPSVLSGTSKSIEATKPAAGVFSFGQKPAESNTSNSPFSFAQKPVSAASPNKRG
RDDDTGEPEVKKSSFSFGQTATSNSSTPFQFGANSVVTTTTSSSSSPFVFGQTPATTSAG
TGLFAFGQQNSTPASTVGQPVFGLQNSAPASSAIPSVFGQQNATVTTTSSTNSNFVFGGS
KAAPAASTGTALPVFGQTNSLAATTTASASTPSLFQFGQANSTAASTPFNFGSQSSGQAA
VFGSGTPNFNFTAQKTETSTAASASGLFKFGGNPSQPAPATTPAFGSGSTFGSSSIPAFG
TGAGSTGAFSGNAPSTTPAFGATPPAFGSSNSSTGQAAPAFGGVFGNSSQPAAPAQSNSV
FQFGAKPADAGQAAPSAGFNFSTSANPAGLGAGSSFNFSGQAPAVNAFSATGPSTPSDGR
KIKKAVRKIRR
NT seq
4896 nt
NT seq
+upstream
nt +downstream
nt
atggatcgcccaagttcccactcccaaagagtaccttatgccaggaaagagggccgaaag
tcactgttttcaaagatgaaagactctatgagggacatgctttccccgtcctggttaacc
gatctggtgcaccatgtgaacaaagattctccaacggatgacaaaaatgtggcaaagggc
tctgaccaaatgactggaatgcaacctgggccctcgggtatgccggacatgacagcttca
caaactccagtgttaccaccaggcccagttggtatgatgggttcagatgttcagcaggca
gggatggttagagattcgccattcaaaaacagaggcacatttgttggtaatggacaacca
aggacactagactttgctggggttggtcagggtgtaaatcctagtgggacaacggcatca
ccatttcagcaaggaaactttccacctccaatatcggagttcacatctgctcagctgcct
ttagcccgtgttacagaaaaatctgatagcattatggcgcaggaggatacattgtcacag
agaagtgatgggtcaaagtcaacaagtggctgttcttccatgataccccaggcagatgca
cccccacggcaaggtacggtgggtgacaagagaaaagccccagaacaagtgactctagga
ggcagctcgccacaagaacagcaagcagcaaagaggcaaagattgcatgtagggagtgct
agcaatcagacattttccaggcgtttgagcgactcatttgtgagtagaccgtcggttcct
gcaatgagcagtagaccagctttcaatacctcgctgtttggttcccctctcaataatgag
tcctccctgttgggaacaagcgtccatgagtccagtttctacccaggtaaaacaaaattt
ggtggtcgttcatccttgtcattcagatctcaaaggaaaaatgtggacctcaaccagtca
ttgccaagccggttgtctgtaccagtgaaggcatttatgaaggccaggccaagattgaat
cccagcaaggaggcagtgactagctcaactgctaaaagaatccttgaagccttggataaa
atgccaacaccaataaatgatgccaaaaggattcccatggtcccacgtcagtggacggaa
agcccatctttcttctcaagagataccagtagatctataagaagtggaccacccacacag
aagttaaacatcagttcccaggcgtcaatcagtaaaaatagacaggtcagctttgcacca
gtccaacagcccagggcctcaactagtcaggttccggaagaaaccattagcaggcctaca
agacaggacacagttatcttgagcagtggagctgcggcaccctcgggtaaaatgaagagg
gacaagtcataccacagaggaagtgcttctgtcaaagcaacactggaagaggaagacact
gtcattataccagacttgcagacagagtttatgttgcctgtaagttctatgcccaagttc
agttttgcaacaccagcttcacagccaaaatcgaatgagcctttcaaaagtagtgcagtt
aacagatcacccgtgggtacagagtcacccgtaaaacaggccctgaacttcacattctcg
tcaccaataattgaacctgtaccagcgaacaagccggcatcaccacagaaatatggggga
ttccagttcagctcaccaatcagtgtggataagaaagatagtgacagtacaggatctaca
aacttcagtaagccacttacaacaacaacatttggttccggcaacacaccagcattctcc
ttctcttcaccggctaccaagttgaatatggatgtcagtttctcaacagctcctaaaccc
aagcctaagatcaatggtcctgtagaaccagctggtggaggattgcaggcagcatcagag
ctgaagcaaggaagtgtgatggatatattaggtggtgggaattcgagtaaatcattctct
tctagtaccccactgtcaactggattaagtgattcgcaggtatcaaaagctcctccaccc
ctcagtgcggtgttcaaacagtctggctggagttgtgatgtttgcttgatcaacaataaa
gatgaggctggtaaatgtgtggcgtgtcagtcaccaaaacctggtggacaaaagccagta
cctatcagtgctcctccacccctcagtgcggtgttcaaacagtccggctggagttgtgat
gtttgcttgatcaacaataaagacgaggctagtaaatgtgtggcatgtcagtcacctaaa
cctggtggacaaaagttaaaagatgtatcctctacaaaaacaagtgacccagcagagccc
ctgaagtcggacttgtttgcaaagtttaaacagccaggtggtagctggacatgtgatacg
tgtttgatacagaacaaacaagatgatacgaaatgtgttgcctgtcagactcggaaacca
ggttcagcatcgtcaaacatgtctcctttagtgagctcaatacagcctggtaactggatc
tgtaataaatgtctcatacaaaacaaaaaggatgatacaatatgtggggcatgtaaggct
gcaaaatctacacccaagccaagtgaattaaacaaatcagacagtttgtttgctaagctg
aaaccagctgcaggtacctgggagtgtgaggtttgtcttgtacaaaacaagtctgatgat
aactcttgtgtggcctgtcagacccccaaaccactgaagttcttcaagcatcccccaggg
gactggacatgtgatacctgtctggttaataacaaggagtctgcagtgaattgtgtggct
tgtaattatgcacgtccagggccacctcgaacacaaacagttccaagtattgcgaagtcc
tatacattatctcaagcgagcggcttcaacatacctagcacagaatcaggcagcataacc
atgtctagcacaggtggcttcaaattcacgccagcaacatcagcatccagtacaaagtca
ggctttgatgtttccaaatttaatgagaatgtgaataaaagtactgattcgaaactttca
agtggtggaggatttaaattcaactctgattcaaaatcagaaacatctagttctgggttc
aagtttggcacacaaacaacttcagaaagtgataaatctagtgttaatactggtggtttt
aaaataaatgcaccatcaggtgataaaccagcaactggatttcagtttggaaatagtgat
acaaaatcagaaaacaaagacggtccgttaaaatctgcaggttttcagtttgggaaatca
gacagttcattatcaaatatatctagttcagtttcaaatgaatcaacaactgtaggagga
tttgtacttgggcaaaaatcagatacatcagctgccaaagacgagttacaggcgacaaca
tcagtgcctggtggctttacatttaaatcaaaggacgctagtgcagaaaagaaagattca
gatttaacaaaattcgacaagcacctctcaagtgtgggcggatttaattttacatcattg
actagtacatcaaattcattggccagcacgtcaagtagttctataggaacgtttgcattt
acagctaccaaagttacagatcctagtgtattatcaggtacctcaaagtcaatagaggca
acaaagcctgcagctggagtgttttcatttggtcaaaagccggcagaatccaatacctca
aattcacctttcagttttgctcaaaagcctgtttctgcggcatcaccaaacaagcgcgga
cgggatgatgatacaggtgagccggaagtcaagaagtcgtcattcagttttggacagact
gccaccagtaattcttcaacaccattccagtttggagctaacagtgtcgttacgacaacc
actagtagcagttcatcaccatttgtgtttggtcagacccctgccacaacatcagctggc
acaggtttatttgcctttggacagcagaattcaactccagctagtactgtaggacaacca
gtatttggtcttcagaattccgctccagccagtagtgcgataccttcagtatttggtcaa
cagaatgccactgtaactacgacatcaagtacaaattcaaattttgtatttggtggttcg
aaggctgctccagcagcaagtacaggcacagcattgccagtatttgggcaaactaactct
cttgctgctaccacgacagcctctgcatcaacaccatcattgttccagtttggtcaggca
aacagtactgctgcaagtactcctttcaactttggatcacagtcaagtggtcaagctgca
gtatttggtagtggtacgccaaactttaactttactgcacagaaaactgagacatctaca
gcagcatctgcttcagggctgttcaagttcggtggtaatccttcccagccagcgccggca
acaacaccagcatttggctcgggctccacatttggttcaagtagtattcctgcatttggt
acgggagctggttccactggggcgtttagcggcaatgcaccatcgacaactccagctttt
ggtgcgactccaccagcatttggatctagtaattcaagcacaggacaggcagctccagca
tttggaggagtgtttggtaacagcagtcagccagcggcaccagcacaatcaaactctgtg
ttccagttcggtgcaaagcctgctgatgcaggacaagctgccccctctgctggattcaac
ttcagtaccagtgccaacccagccggtctgggtgctggttctagcttcaacttctcggga
caggctcctgcagtcaatgcgttcagtgcgacaggtcccagtacgccatcggacgggaga
aaaatcaagaaagcagtccgaaaaatacggagatga
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