Mercenaria mercenaria (northern quahog): 123524027
Help
Entry
123524027 CDS
T07835
Name
(RefSeq) DNA excision repair protein ERCC-8-like
KO
K10570
DNA excision repair protein ERCC-8
Organism
mmer
Mercenaria mercenaria (northern quahog)
Pathway
mmer03420
Nucleotide excision repair
mmer04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
123524027
09124 Replication and repair
03420 Nucleotide excision repair
123524027
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
mmer04121
]
123524027
03400 DNA repair and recombination proteins [BR:
mmer03400
]
123524027
Ubiquitin system [BR:
mmer04121
]
Ubiquitin ligases (E3)
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
123524027
DNA repair and recombination proteins [BR:
mmer03400
]
Eukaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
Cul4-CSA complex
123524027
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_CDC20-Fz
WD40
WD40_Prp19
WD40_WDHD1_1st
Beta-prop_CAF1B_HIR1
Beta-prop_TEP1_2nd
Beta-prop_EML_2
EIF3I
Beta-prop_EIPR1
Beta-prop_RIG_2nd
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_EML
WDR90_beta-prop_4th
Beta-prop_SCAP
Beta-prop_WDR75_1st
Beta-prop_SPT8
Beta-prop_WDR90_POC16_2nd
Beta-prop_IFT122_1st
WD_LRWD1
ANAPC4_WD40
Beta-prop_TEP1_C
WD40_MABP1-WDR62_1st
Beta-prop_WDR19_1st
Beta-prop_WDR11_2nd
Motif
Other DBs
NCBI-GeneID:
123524027
NCBI-ProteinID:
XP_045157831
LinkDB
All DBs
Position
3:92710134..92724268
Genome browser
AA seq
412 aa
AA seq
DB search
MLRFLNSRESGVSDPLQFYRAETTRRVFNLGLSENKDFERLFAGNINTLDVDLIERRYLL
AGGADGFIIIYDICNTTGEVKYTCPSVGSIALNNRHRHKFSVETVLWYPLDTGMFTSSGT
DKLLKIWDTNRLKPADQYEFSGVVCNHHMSPIATKHCLIAVATQSSSVKLVDLKSGSSTH
SLKGHNKGVFNVKWSPYHEFILASAGADNKIFLWDIRNAKGSLLDFDQYNGKPPKNTIID
NGVTAHSRPVTGLQFSADGLHLVSCGLDNKVQVWCTRTGRNMNLKISVPNSGTRTAQFAI
SQGSTPDLIFMPNGKSIDAYDICTGERQYTLHGHFRQVNCCYYHPDFHELYSGGGDRNIL
VWGPRTGTSVNYICKKEANSVKQEPGNDLIVNVEQNTALAATADSWSSDEET
NT seq
1239 nt
NT seq
+upstream
nt +downstream
nt
atgctccgttttttgaactccagggaatcaggtgtcagcgatcccctccagttttacaga
gctgaaacaacaagacgagttttcaatctgggtctcagcgaaaacaaggacttcgaaaga
ttgtttgcaggcaatattaacacattagatgtcgatcttattgaaagaagatatttgctg
gctggtggggctgatgggttcatcattatttacgacatctgcaatactactggagaagtc
aagtatacatgtccatcagttggttcaatagctctcaacaatcgacaccgacacaagttc
agtgtggagactgtattatggtaccctttagacactggaatgttcacttcaagtggtaca
gataagctattgaaaatatgggacaccaacagacttaagccagcagatcagtatgaattc
agtggtgtagtgtgcaaccatcatatgtctcctatagcaactaagcattgtcttattgct
gttgccacccagagttcatctgtgaagcttgtagacctgaagtctggatcttctacacac
agtttaaagggacataacaaaggtgtattcaatgtaaagtggtctccgtatcatgaattc
attttggcatctgctggagctgacaacaagatatttctttgggacatcagaaatgcaaag
ggcagccttctggactttgaccagtataatggaaaacctccaaaaaacaccattatagac
aatggggtaactgctcacagtcgacctgtgacaggccttcagttttcagcggatgggtta
caccttgtttcatgtggtttagacaataaagtacaagtatggtgtacaagaactggaaga
aatatgaatttaaagatctcagtgccaaattcaggaaccagaactgcacaatttgcaatc
tctcagggcagtactccagacttaatatttatgccaaatggtaaaagtatagatgcatat
gatatatgcacaggtgaaagacaatacacattacacggccattttagacaagttaattgt
tgttattatcatccggattttcatgaactatactctggtggtggtgacaggaatattctt
gtctggggaccaaggacaggaaccagtgtaaattacatatgcaaaaaggaggcaaacagt
gtgaaacaggaaccaggaaatgatttgattgtgaatgtggaacaaaatacagcattagca
gcaacagcagacagctggagtagtgatgaagagacgtga
DBGET
integrated database retrieval system
