KEGG   Mercenaria mercenaria (northern quahog): 123524466
Entry
123524466         CDS       T07835                                 
Name
(RefSeq) TATA-box-binding protein-like 1
  KO
K03120  transcription initiation factor TFIID TATA-box-binding protein
Organism
mmer  Mercenaria mercenaria (northern quahog)
Pathway
mmer03022  Basal transcription factors
Brite
KEGG Orthology (KO) [BR:mmer00001]
 09120 Genetic Information Processing
  09121 Transcription
   03022 Basal transcription factors
    123524466
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03000 Transcription factors [BR:mmer03000]
    123524466
   03021 Transcription machinery [BR:mmer03021]
    123524466
Transcription factors [BR:mmer03000]
 Eukaryotic type
  beta-Scaffold factors with minor groove contacts
   TATA-binding proteins
    123524466
Transcription machinery [BR:mmer03021]
 Eukaryotic type
  RNA polymerase II system
   Basal transcription factors
    TFIID
     123524466
  RNA polymerase III system
    TFIIIB
     123524466
  RNA polymerase I system
    SL1/TIF-1B
     123524466
SSDB
Motif
Pfam: TBP Peptidase_M55 AstE_AspA_hybrid
Other DBs
NCBI-GeneID: 123524466
NCBI-ProteinID: XP_045158615
LinkDB
Position
2:39619565..39620092
AA seq 175 aa
MIITNVVYSAHLDCAIDLRRLCYRISNARYDPRTFPGLIWQHKTIGGNCLVFSNGVINCN
GKATSIQQGRQRLRRYARRIQRLGYTVCLKEIKCITVSASHTLSTTLDLNQLVKERQTVY
EPELFSAVNLKNDGVNFCCFHSGKVVITGIKDHTQLDDVVYPVLIELELYTRKKE
NT seq 528 nt   +upstreamnt  +downstreamnt
atgattatcaccaacgttgtgtacagtgcccatttggactgtgctattgacttgaggcgc
ttgtgttatcgtatatcaaacgctcgttacgatcctagaacattccctggactgatctgg
caacacaagaccataggaggaaattgcttagtcttctccaacggcgttatcaactgtaat
ggaaaagcgaccagtattcaacagggacgtcaaagactaagacgttatgccagacgtata
cagcgattagggtacacagtgtgtctgaaagagatcaaatgcataaccgtgtcagccagt
cacaccttaagtaccaccctagacttaaatcagttggtaaaagaaagacagaccgtgtat
gaacccgaactattttcagcggtgaatttaaaaaatgatggagtcaatttttgttgtttt
cacagtggtaaagtggtcattactggaatcaaagatcacactcaactagatgatgtggtc
tacccagtattaattgaactggaactctacacgcgtaagaaggagtga

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