Mercenaria mercenaria (northern quahog): 123525138
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Entry
123525138 CDS
T07835
Name
(RefSeq) very low-density lipoprotein receptor-like isoform X1
KO
K20053
very low-density lipoprotein receptor
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
mmer04131
]
123525138
Membrane trafficking [BR:
mmer04131
]
Endocytosis
Clathrin-mediated endocytosis
Low-density lipoprotein receptor (LDLR) family proteins
123525138
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Ldl_recept_a
Ldl_recept_b
EGF_CA
SGL
Vgb_lyase
FXa_inhibition
DUF5050
cEGF
EGF
DUF1180
DUF4690
UFD1_N1
Motif
Other DBs
NCBI-GeneID:
123525138
NCBI-ProteinID:
XP_045159843
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Position
3:33630750..33646581
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AA seq
910 aa
AA seq
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MKEFNKNYGLLILLLIFGCVRFLRADDVNEVTCESTHWQCLKSGKCIPLSWKCDSERSDC
GPDDDSDEQNCPPKTCADEEFSCPSTGQCVPKRWVCDDDADCDNGEDEANCEDKEKGHCG
VDEFSCDNGHCLSMQWRCDGVEDCDNGLDEMNCTATCDVGMFKCHDGNCISDSWLCDGDS
DCLDGSDEIECGEKTCSDGEFKCDDKLRCIDIKWKCDGDFDCSDHSDETNNCTYTNHEEP
EICSPSTEFKCVTSGECIHKSWQCDGDPDCTDSSDENNDCDYTCRVDQFMCENHVCISNT
LKCDGNADCEDRSDEKNCVSNKTCDELGEFDCYGDSSFCIAIEKVCDGKNDCQRREDEDS
ALCKPKKDKPDRDPCLHHKCGNHSHCVNKAYSDSTLVAKCECNSGYRWVEEEKLCKDIDE
CEQPGLCSQICINTRGGYKCECYPGYTIEKHYFCRANGEKAWLYYTNRRDIRRLRTDSRY
MEIIVEETTNSIALDIDYEDGLMFWTDGGTEKIMRAKVGGDAVLANDIQTLISNEKGDAF
SPDGLAVDWLYKHFYWTDTGSDTIRVANYAGDKSKTLVSTGLDDPRAICVDPENGYMYWT
DWGQNPKIERCGMNGENRETIVNGGDDLQWPNGLTIDYIGKRIYWIDSKLHKIGTANFDG
SGKGHVLVDATEISRPFSISVFEDSLYWTDWHTNSIRSIHKITGRNAKTLSLGSYSVMDI
KVYHELRQIRDFKEKAKDLCRNAQCEYMCLPAAKMSSNATVSCVCADNQQLKSDKRSCMA
GPATPAHTPKPTTQAPITQKTGETTQKGSGTTPKPVQTTKGSGYTVVPEGTSTVGTPGKQ
EGNGVGGIAAITAAIVVVLLIVVFAVGCFNFRRYNSRNKKSMNFDNPVNGKLQQQTIIVR
SEVMNHKWSR
NT seq
2733 nt
NT seq
+upstream
nt +downstream
nt
atgaaggaatttaataaaaattacggattattaattctattgttgatatttggatgtgtg
cgttttttgagagctgatgatgtgaatgaagtaacttgtgaatctactcattggcaatgt
ttaaagagtggaaaatgcattccgcttagctggaaatgtgattcagaaagatccgactgt
gggcctgatgacgactccgatgaacaaaactgtcctccaaagacctgtgcagatgaagaa
ttcagttgtcctagcactggccagtgtgtgcctaaaagatgggtatgcgatgatgatgct
gattgtgacaatggagaagatgaagccaattgtgaagacaaggagaaaggacactgtgga
gttgatgagttcagctgtgacaatggccactgtttaagcatgcaatggagatgtgatgga
gtggaagattgtgataatggacttgatgaaatgaactgcactgcaacttgcgatgttggc
atgttcaagtgccatgatggaaattgtatttctgactcgtggctttgtgatggagattct
gattgtttagacgggtctgatgaaattgaatgcggagaaaaaacatgttctgatggggaa
ttcaaatgtgacgataaactaagatgtattgacatcaaatggaagtgtgatggcgatttt
gactgctcagatcacagtgatgaaactaacaattgcacttacactaaccacgaagaacca
gagatctgttcgccatcaacagagttcaagtgtgtcacatctggagaatgtatccacaag
tcgtggcagtgtgatggtgatccagactgtactgatagctctgatgaaaataatgattgt
gattacacatgtagggttgaccaatttatgtgtgaaaatcatgtgtgtatatctaataca
ttgaaatgtgatggaaatgctgactgcgaggatagatctgatgaaaaaaattgtgtcagt
aacaaaacatgtgatgaactgggcgaatttgattgctatggtgatagttccttttgtata
gccattgaaaaagtatgtgatggtaaaaatgactgtcagcgcagagaagatgaggacagt
gctctctgtaaacccaagaaggataaacctgaccgtgatccatgcttgcatcacaaatgt
ggtaaccattctcactgtgtaaacaaggcatattccgacagcacacttgtagctaaatgt
gagtgcaacagtggataccgatgggtagaggaggagaaattgtgtaaagacattgacgag
tgtgaacagccaggtctctgctctcagatctgtatcaatactagaggtggctataaatgc
gagtgttatcccggctataccattgagaagcattatttctgccgagctaatggcgaaaag
gcatggttgtactacactaatcgtagggatattcgtagactgaggactgactctagatac
atggaaattattgttgaggaaacaactaacagcattgctttagatatagattatgaagat
ggtctgatgttttggacagatggtggcactgaaaaaattatgagagccaaggttggtggt
gatgcggttcttgctaatgatattcaaacgttgatcagtaatgaaaagggagatgccttt
tccccagatggacttgctgttgactggctgtacaaacacttctactggactgacactggg
tctgataccatcagggtggcaaattatgctggagacaagtccaagacactcgtctcaact
ggtcttgatgatccaagagctatctgtgttgacccagaaaatggatatatgtactggaca
gactggggtcagaacccaaagattgagagatgtggaatgaatggtgagaacagagaaaca
attgtgaatggtggtgatgatttgcaatggcctaatggtctcactattgattatattgga
aagcgaatttattggattgattccaaactgcacaagattggtactgctaactttgatgga
agtggcaagggacatgttcttgttgatgcgacagagatcagtcgtccattctccatctcc
gtatttgaagattctctttactggacagactggcacacaaactccatccgttcaatccat
aagattactggtagaaatgcaaagacattgtcccttggttcttactctgtgatggatata
aaagtctaccatgaattgaggcaaataagagacttcaaagaaaaagccaaggacttgtgc
agaaatgcccagtgtgaatacatgtgcctgccagcagccaagatgagcagtaatgccaca
gtatcatgtgtttgtgctgacaaccaacagttgaaaagtgataaaagatcttgtatggct
ggcccagcaactcctgcacacactccaaaacccacaacccaggcaccaatcacccaaaaa
acaggagaaaccacacaaaaaggaagtggaacaactccaaaacctgtacaaactaccaaa
ggatcagggtacacagttgttccagaaggaaccagtacagttggtacaccaggtaaacaa
gaaggaaatggcgttggaggaattgctgccattactgctgccatcgttgttgtattgctc
attgttgtatttgctgttggatgtttcaactttagaaggtacaactctagaaataagaag
agtatgaactttgataatcctgtaaacggaaaactacaacaacagacgatcattgtacga
tcagaagtgatgaaccacaaatggagccgttaa
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