Mercenaria mercenaria (northern quahog): 123525265
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Entry
123525265 CDS
T07835
Name
(RefSeq) transient receptor potential cation channel subfamily A member 1-like isoform X2
KO
K04984
transient receptor potential cation channel subfamily A member 1
Organism
mmer
Mercenaria mercenaria (northern quahog)
Brite
KEGG Orthology (KO) [BR:
mmer00001
]
09180 Brite Hierarchies
09183 Protein families: signaling and cellular processes
04040 Ion channels [BR:
mmer04040
]
123525265
Ion channels [BR:
mmer04040
]
Voltage-gated cation channels
Transient receptor potential channel (TRP)
123525265
BRITE hierarchy
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Gene cluster
GFIT
Motif
Pfam:
Ank_2
Ank
Ank_4
Ank_3
Ank_5
Ion_trans
Motif
Other DBs
NCBI-GeneID:
123525265
NCBI-ProteinID:
XP_045160098
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All DBs
Position
3:complement(24006878..24088091)
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AA seq
1151 aa
AA seq
DB search
MHKLRRLQSRLTKYNLAKEMDSFAVDLGQHARYNKRIETMDSDDQDAKLQNILKAASKGS
LEDFQRLYESDPSRISIQDAKGCTPTHKAAEAGRVNILTFIHEKGGDLNVTDNNGNTPLH
TAVKNDKPSAVTFLLDHGADSAILNVDQLAPIHLAVDVNARKALKALLIHDKVDPNLKGE
AGMRPLHYCAYKDRDECAVMLLENGSKPCIKCDNGFFPINIAGKCASARTLEVLIKHVEA
LGYKREDVLSFSDKENNMPLHCAVNSGDLKAVKVCLSAGAPVDAKQEDSSTPLHFACAQG
SIDMVKLMQEMQPERFKQAVLTADVLKMTPLHRAAHFDHVTVVVYLIEHGADINAQDTNE
RTPLLLASSKGGWKTVSFLLKQNADITVRDKENRNFLHLAIKYGAPINSFGCSVLKDLKN
LLNERDNFGCTPLHYASREGHLVAIDDLIKLGATINLKDNDKKSPLHFAAKYGRYNTCKM
LLDSQMGPNIINETDGDGLSTLHIAAQNGHTKIITLLMQKGAYVTKDNMDNSPLHLAASN
GYTRSMKLLLTVYPNLLDCCNKDKDTAIHLASRENHPSAVEMLMTVGAEFTRNTENDTFM
DIAIRERHTEVAYAVIRHDRWEEVMKLCSKEFGTPMNGLVQCLPDACMAALDRCQTTSKH
DRRSPDLSVHYNFKYLQCPLRYVKGKEKVVKHYTPMLALNTMVRHGRVQCLSHPVSEAFL
TMKWRAYGSWFHISNLVFYLIFLALFTALVTTCTFSFTPVTSNSNSTNNSTDESGNVADI
QACHFNPMQKVSVYFVLIFCSLNMLKEIVQLIQQRKKYLQDLTNAIEWVLYGSAVIYIAP
FIGNTTVSWQWEAGAIAVFLAWFNCLLYLQRFDFFGIYVVMFLEILKTLVQVLLVFSILL
IAFSMAFFMLLHKESNHAFSSPGLSLLRTSMMMFELDFMASFSDPYTDDDTKSLYFGGAT
IFLLVIFVLLMPILLMNLLIGLAVGDIESVQKNATLKRLAMQVELHTDLERKLPFRILEM
VDKSEYTYYPNKCASVLSKLLSKMSFIGDTFEGDGDKSLSHNALVYEELYKQKKRIKEIS
ANMNKQYELMRLIVQKMEIHTEEENHDEGYSESFDIPGNLQNASKWAPARHNLVRQSAVV
SQWKQSMSVDN
NT seq
3456 nt
NT seq
+upstream
nt +downstream
nt
atgcacaaactccggaggttgcagtcacgattgacgaagtataatttagccaaagaaatg
gacagttttgccgtagatctgggtcaacatgcaagatacaacaaaagaatagaaactatg
gacagcgatgaccaagacgcaaaacttcaaaatattttgaaggcagcatcgaaagggagc
cttgaagattttcagcgcctgtatgagagtgacccaagtcgtatcagcattcaagatgcc
aaaggctgcactcccacacacaaggcggcggaggcgggacgcgtcaatattctcacattt
atccatgaaaagggaggagatttgaatgtgacagataacaatggcaacactcccctacat
acagccgtaaagaatgataaaccatctgctgtgacatttctgctggaccacggagcagac
agtgccatcttgaatgttgaccagctagctcctatacatcttgccgttgacgtcaatgct
aggaaagctctcaaagccctgcttatccatgacaaagttgatcccaacttgaaaggagaa
gccggtatgagaccgctgcattattgtgcctacaaagatagagacgagtgtgctgtgatg
ctgcttgagaatggttccaaaccatgtataaaatgtgacaatgggttctttccaatcaac
attgcaggaaaatgcgcatccgccagaacacttgaagttcttatcaaacacgttgaggct
ttaggttataaaagagaagacgtgttaagcttttccgacaaggaaaacaatatgccactc
cattgtgctgtcaacagtggcgatctaaaggccgtaaaagtgtgtttgtcagcaggtgct
ccagttgatgcaaagcaagaggacagttctacgcccctacattttgcctgtgctcagggt
agcattgatatggtgaaactcatgcaggagatgcagcctgaaagattcaagcaagcagtc
ctaacagcagatgttctcaaaatgactcctcttcacagagcagcacattttgaccacgtc
acagttgtagtatatctgatagaacatggtgcagacattaatgcacaagacacaaatgaa
cgaacaccgttgcttctcgcgtcttctaaaggtggatggaaaactgttagctttctactc
aagcagaatgctgatataacggtgagagacaaagaaaacaggaactttctgcatcttgct
atcaaatatggagcaccgataaacagttttgggtgttctgtattaaaggacttgaagaat
ttattgaatgaacgggacaattttggatgcacaccgttacattatgcttctagagaaggg
cacctggtggcaattgacgatctcattaagctgggagcaactataaatttgaaagataat
gataaaaaatcaccgctgcatttcgcagcaaagtatggacgctacaacacctgtaagatg
cttcttgacagccaaatgggaccaaacattataaatgaaactgatggggatggactatcc
actttgcacatcgctgcgcagaatggtcacactaaaatcattaccctcctgatgcagaaa
ggcgcctatgtcacaaaagacaatatggacaattccccgcttcatctagcagcaagcaat
ggttacacacggagtatgaaattgttactgacggtctatccaaatttactcgactgctgc
aacaaagataaggacacagcaatacacctggcatccagggagaaccatccgtcagctgta
gagatgcttatgacagtgggagcagaattcacacgaaatacagagaacgatacgtttatg
gacattgctatcagggaaagacacacggaagtggcatatgctgtaattagacatgatagg
tgggaagaagtgatgaagttgtgttcaaaggaatttggtacacctatgaatggacttgtg
cagtgtttacctgatgcctgtatggctgcgctcgatagatgccaaactacttcaaagcat
gaccgacggagtccagatttatctgttcactacaacttcaagtatctccaatgtccacta
cgttatgtcaaaggaaaggagaaagtcgtaaaacattatactccaatgcttgccttgaat
actatggtccgacacggtcgagttcagtgtttgtctcatccagtcagtgaagcgttcttg
acaatgaagtggcgtgcgtatggctcttggttccacatttctaatctagtcttttacctc
attttcttggcgttgtttactgctctagtcacaacatgtacattttcattcacgcccgtc
acatcaaacagcaattccacaaataattcgacagacgagagtggtaatgttgcagatata
caagcatgtcactttaatccaatgcaaaaagtctctgtttacttcgtgttgatattctgt
tctttgaacatgctgaaagaaatagtacagcttattcagcagcggaaaaagtatcttcaa
gacttaacgaacgccattgagtgggtattgtatggatcagcagtgatctatattgcacct
tttataggcaatactaccgttagctggcaatgggaggccggtgccatagctgtattctta
gcctggttcaattgtctactttatctacaaagatttgatttttttggaatctatgttgtg
atgttccttgaaatccttaaaacactggtacaggtgttgttagtgttctccattctcctg
atagcattcagcatggccttcttcatgctactccataaagagagcaaccatgcattttcg
tcgcccggtctgtccttgttgaggacgtccatgatgatgtttgagctagacttcatggcg
agtttcagtgatccatacaccgatgacgatacaaagtcactatactttggaggggcgaca
atcttcttacttgtcatattcgttcttctgatgccaatcctcctgatgaacctattaatt
ggtttggctgtaggtgatatagagtcggtacagaagaatgcaacattgaagcgacttgcc
atgcaggtagaactgcacacagacttggaacgtaaattgccatttcggattttggaaatg
gttgataagtcagagtatacgtattacccgaataagtgtgccagcgttctctcaaagttg
ctgtctaaaatgtcattcatcggagacacgtttgagggagatggagacaaatcactgtct
cacaatgccttggtgtatgaggaactgtacaagcagaaaaagagaattaaagaaatatcg
gccaacatgaacaagcagtacgagttaatgcgcttgattgtacagaaaatggagatacac
acagaggaagaaaaccatgatgaagggtattccgaatcctttgacatacctggtaaccta
caaaatgcctctaaatgggctccagcaagacataatctcgtacgacagagcgccgtagtg
tctcagtggaagcagagtatgagcgtcgataattga
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